Hb_001409_060

Information

Type transcription factor
Description TF Family: TRAF
Location Contig1409: 139235-144337
Sequence    

Annotation

kegg
ID rcu:RCOM_1160850
description Regulatory protein NPR1, putative
nr
ID XP_002520549.1
description Regulatory protein NPR1, putative [Ricinus communis]
swissprot
ID Q8L746
description Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1
trembl
ID B9S3I0
description Regulatory protein NPR1, putative OS=Ricinus communis GN=RCOM_1160850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11071: 139239-144873 , PASA_asmbl_11072: 139239-145078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001409_060 0.0 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
2 Hb_102948_010 0.0841683402 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
3 Hb_001766_070 0.0908273952 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002218_020 0.0933119373 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
5 Hb_000673_010 0.0948564891 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
6 Hb_000663_080 0.10130697 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
7 Hb_001430_020 0.1034217381 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
8 Hb_004659_010 0.1038080053 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
9 Hb_000137_010 0.1041644203 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
10 Hb_003925_060 0.1051572583 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
11 Hb_012286_020 0.1058091038 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
12 Hb_006846_170 0.1070873452 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
13 Hb_000086_270 0.1073643269 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
14 Hb_000003_680 0.1077828742 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
15 Hb_005235_070 0.1089178516 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
16 Hb_006120_040 0.1096609152 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
17 Hb_000787_080 0.1105967544 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
18 Hb_087313_010 0.1109527625 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001322_020 0.111587585 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
20 Hb_001009_120 0.1133179281 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001409_060 Hb_001409_060 Hb_102948_010 Hb_102948_010 Hb_001409_060--Hb_102948_010 Hb_001766_070 Hb_001766_070 Hb_001409_060--Hb_001766_070 Hb_002218_020 Hb_002218_020 Hb_001409_060--Hb_002218_020 Hb_000673_010 Hb_000673_010 Hb_001409_060--Hb_000673_010 Hb_000663_080 Hb_000663_080 Hb_001409_060--Hb_000663_080 Hb_001430_020 Hb_001430_020 Hb_001409_060--Hb_001430_020 Hb_102948_010--Hb_002218_020 Hb_102948_010--Hb_001430_020 Hb_087313_010 Hb_087313_010 Hb_102948_010--Hb_087313_010 Hb_005235_070 Hb_005235_070 Hb_102948_010--Hb_005235_070 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020 Hb_001766_070--Hb_000673_010 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_000137_010 Hb_000137_010 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_008120_040 Hb_008120_040 Hb_001766_070--Hb_008120_040 Hb_002218_020--Hb_001430_020 Hb_002218_020--Hb_012438_030 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_000673_010--Hb_008120_040 Hb_000673_010--Hb_005235_070 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_006120_040 Hb_006120_040 Hb_000663_080--Hb_006120_040 Hb_000011_240 Hb_000011_240 Hb_000663_080--Hb_000011_240 Hb_000086_270 Hb_000086_270 Hb_000663_080--Hb_000086_270 Hb_000975_210 Hb_000975_210 Hb_000663_080--Hb_000975_210 Hb_006846_170 Hb_006846_170 Hb_000663_080--Hb_006846_170 Hb_003228_100 Hb_003228_100 Hb_000663_080--Hb_003228_100 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_001430_020--Hb_003883_010 Hb_001430_020--Hb_005235_070 Hb_001430_020--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0396 30.8663 46.0945 16.7825 13.6596 7.58583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5088 11.6351 12.011 8.88974 26.0726

CAGE analysis