Hb_001409_080

Information

Type -
Description -
Location Contig1409: 173905-181149
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12440g
description POPTRDRAFT_578835; hypothetical protein
nr
ID XP_011017907.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9IMM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12440g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11074: 179225-179692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001409_080 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
2 Hb_127263_010 0.0615613798 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
3 Hb_000866_060 0.0762628867 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
4 Hb_176680_010 0.0799190043 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
5 Hb_000239_050 0.0869326336 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
6 Hb_006938_060 0.0973356205 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_002762_050 0.0984510638 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
8 Hb_012807_030 0.0990941224 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
9 Hb_067558_010 0.0991952339 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_000041_210 0.1010063267 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
11 Hb_156093_010 0.1038234795 - - hypothetical protein RCOM_0504250 [Ricinus communis]
12 Hb_000300_110 0.1082829207 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
13 Hb_005181_190 0.1176766593 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
14 Hb_006267_040 0.1196986888 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
15 Hb_012389_010 0.1205226449 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
16 Hb_029920_010 0.123506135 - - pepsin A, putative [Ricinus communis]
17 Hb_001491_070 0.1287037044 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
18 Hb_000128_040 0.1297476367 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
19 Hb_000947_010 0.1299813088 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_010743_010 0.1316955452 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001409_080 Hb_001409_080 Hb_127263_010 Hb_127263_010 Hb_001409_080--Hb_127263_010 Hb_000866_060 Hb_000866_060 Hb_001409_080--Hb_000866_060 Hb_176680_010 Hb_176680_010 Hb_001409_080--Hb_176680_010 Hb_000239_050 Hb_000239_050 Hb_001409_080--Hb_000239_050 Hb_006938_060 Hb_006938_060 Hb_001409_080--Hb_006938_060 Hb_002762_050 Hb_002762_050 Hb_001409_080--Hb_002762_050 Hb_127263_010--Hb_000239_050 Hb_000300_110 Hb_000300_110 Hb_127263_010--Hb_000300_110 Hb_127263_010--Hb_000866_060 Hb_000424_130 Hb_000424_130 Hb_127263_010--Hb_000424_130 Hb_029920_010 Hb_029920_010 Hb_127263_010--Hb_029920_010 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_000866_060--Hb_000239_050 Hb_015044_010 Hb_015044_010 Hb_000866_060--Hb_015044_010 Hb_000866_060--Hb_000300_110 Hb_176680_010--Hb_006938_060 Hb_119443_010 Hb_119443_010 Hb_176680_010--Hb_119443_010 Hb_067558_010 Hb_067558_010 Hb_176680_010--Hb_067558_010 Hb_012539_080 Hb_012539_080 Hb_176680_010--Hb_012539_080 Hb_040718_010 Hb_040718_010 Hb_176680_010--Hb_040718_010 Hb_000239_050--Hb_000300_110 Hb_000041_210 Hb_000041_210 Hb_000239_050--Hb_000041_210 Hb_007545_070 Hb_007545_070 Hb_000239_050--Hb_007545_070 Hb_000239_050--Hb_000424_130 Hb_006938_060--Hb_040718_010 Hb_174168_010 Hb_174168_010 Hb_006938_060--Hb_174168_010 Hb_006938_060--Hb_000866_060 Hb_006938_060--Hb_006267_040 Hb_087599_010 Hb_087599_010 Hb_002762_050--Hb_087599_010 Hb_012807_030 Hb_012807_030 Hb_002762_050--Hb_012807_030 Hb_000008_160 Hb_000008_160 Hb_002762_050--Hb_000008_160 Hb_000694_080 Hb_000694_080 Hb_002762_050--Hb_000694_080 Hb_003777_080 Hb_003777_080 Hb_002762_050--Hb_003777_080 Hb_156093_010 Hb_156093_010 Hb_002762_050--Hb_156093_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00490138 0.309016 0.131555 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0589893 0.385929

CAGE analysis