Hb_001410_020

Information

Type -
Description -
Location Contig1410: 45322-48547
Sequence    

Annotation

kegg
ID rcu:RCOM_1312220
description cdk8, putative (EC:2.7.11.23)
nr
ID XP_002518859.1
description cdk8, putative [Ricinus communis]
swissprot
ID Q84TI6
description Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana GN=CDKE-1 PE=1 SV=2
trembl
ID B9RYP0
description Cdk8, putative OS=Ricinus communis GN=RCOM_1312220 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cyclin-dependent kinase e-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11101: 45282-47976 , PASA_asmbl_11103: 48218-48343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_020 0.0 - - cdk8, putative [Ricinus communis]
2 Hb_000260_180 0.0518931222 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
3 Hb_162275_050 0.0565147601 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
4 Hb_012779_090 0.0623189519 - - PREDICTED: lipase member N [Jatropha curcas]
5 Hb_000373_230 0.0672472042 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
6 Hb_006588_210 0.0694534882 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
7 Hb_000025_730 0.0710915454 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
8 Hb_002217_170 0.073226028 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
9 Hb_001195_530 0.0733602742 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000915_060 0.0735709371 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
11 Hb_003927_040 0.076528929 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
12 Hb_001089_050 0.0785241115 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
13 Hb_002006_040 0.0793672771 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
14 Hb_004553_030 0.0799093309 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
15 Hb_000087_060 0.0799567295 - - protein transporter, putative [Ricinus communis]
16 Hb_000861_080 0.0801421117 - - PREDICTED: protein ELC-like [Jatropha curcas]
17 Hb_003835_070 0.0802305546 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
18 Hb_012194_030 0.080504053 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
19 Hb_002798_070 0.0818158561 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
20 Hb_000172_430 0.0821921279 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001410_020 Hb_001410_020 Hb_000260_180 Hb_000260_180 Hb_001410_020--Hb_000260_180 Hb_162275_050 Hb_162275_050 Hb_001410_020--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_001410_020--Hb_012779_090 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_006588_210 Hb_006588_210 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730 Hb_000260_180--Hb_006588_210 Hb_000260_180--Hb_012779_090 Hb_000260_180--Hb_162275_050 Hb_005541_010 Hb_005541_010 Hb_000260_180--Hb_005541_010 Hb_000260_180--Hb_000025_730 Hb_162275_050--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_162275_050--Hb_012194_030 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_003835_070 Hb_003835_070 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090 Hb_002798_070 Hb_002798_070 Hb_012779_090--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_012779_090--Hb_000243_250 Hb_012779_090--Hb_012194_030 Hb_000395_130 Hb_000395_130 Hb_012779_090--Hb_000395_130 Hb_000915_060 Hb_000915_060 Hb_000373_230--Hb_000915_060 Hb_000094_090 Hb_000094_090 Hb_000373_230--Hb_000094_090 Hb_000723_110 Hb_000723_110 Hb_000373_230--Hb_000723_110 Hb_000363_120 Hb_000363_120 Hb_000373_230--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000373_230--Hb_000809_160 Hb_000340_400 Hb_000340_400 Hb_006588_210--Hb_000340_400 Hb_004870_050 Hb_004870_050 Hb_006588_210--Hb_004870_050 Hb_000087_060 Hb_000087_060 Hb_006588_210--Hb_000087_060 Hb_002073_200 Hb_002073_200 Hb_006588_210--Hb_002073_200 Hb_000025_730--Hb_002073_200 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_000025_730--Hb_162275_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4016 26.0495 17.3018 12.1316 15.9411 11.7637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80267 15.0227 15.3489 13.4413 10.4884

CAGE analysis