Hb_001410_070

Information

Type -
Description -
Location Contig1410: 109711-111952
Sequence    

Annotation

kegg
ID rcu:RCOM_1312180
description structural constituent of ribosome, putative
nr
ID KDP25265.1
description hypothetical protein JCGZ_20421 [Jatropha curcas]
swissprot
ID Q8VY91
description 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=2 SV=1
trembl
ID A0A067JZ50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20421 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein s6 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11108: 109707-112030 , PASA_asmbl_11109: 110770-111419 , PASA_asmbl_11110: 110385-110489
cDNA
(Sanger)
(ID:Location)		 015_G23.ab1: 109707-111772 , 017_B22.ab1: 109707-111823 , 032_N09.ab1: 109742-111823 , 040_I16.ab1: 109742-111920 , 053_E09.ab1: 109747-111784

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_070 0.0 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
2 Hb_006538_120 0.0733052742 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
3 Hb_001935_100 0.0767013137 - - structural molecule, putative [Ricinus communis]
4 Hb_000796_160 0.0793113958 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
5 Hb_000025_780 0.0803902051 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
6 Hb_009775_010 0.0890844648 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
7 Hb_005539_010 0.0961466657 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
8 Hb_019053_060 0.0965331388 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
9 Hb_000227_170 0.1003875202 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_001587_180 0.1004413681 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
11 Hb_001769_170 0.1018435878 - - 50S ribosomal protein L31, putative [Ricinus communis]
12 Hb_001946_160 0.1033441401 - - putative chaperon P13.9 [Castanea sativa]
13 Hb_000221_140 0.1060363577 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_000580_150 0.1068479136 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
15 Hb_000487_260 0.1073233401 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
16 Hb_005494_010 0.1107055197 - - catalytic, putative [Ricinus communis]
17 Hb_000941_100 0.1115813505 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
18 Hb_000173_250 0.114689777 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
19 Hb_000349_270 0.1161665581 - - PREDICTED: uncharacterized protein ycf49 isoform X1 [Jatropha curcas]
20 Hb_003747_230 0.116482124 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001410_070 Hb_001410_070 Hb_006538_120 Hb_006538_120 Hb_001410_070--Hb_006538_120 Hb_001935_100 Hb_001935_100 Hb_001410_070--Hb_001935_100 Hb_000796_160 Hb_000796_160 Hb_001410_070--Hb_000796_160 Hb_000025_780 Hb_000025_780 Hb_001410_070--Hb_000025_780 Hb_009775_010 Hb_009775_010 Hb_001410_070--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_001410_070--Hb_005539_010 Hb_000221_140 Hb_000221_140 Hb_006538_120--Hb_000221_140 Hb_006538_120--Hb_009775_010 Hb_006538_120--Hb_005539_010 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_001935_100--Hb_005539_010 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_000796_160--Hb_000025_780 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_000025_780--Hb_000227_170 Hb_000025_780--Hb_001935_100 Hb_007533_010 Hb_007533_010 Hb_000025_780--Hb_007533_010 Hb_005494_010 Hb_005494_010 Hb_000025_780--Hb_005494_010 Hb_009775_010--Hb_000221_140 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_000173_250 Hb_000173_250 Hb_009775_010--Hb_000173_250 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120 Hb_000212_440 Hb_000212_440 Hb_005539_010--Hb_000212_440 Hb_005539_010--Hb_000941_100 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.9843 43.4759 134.647 52.8505 39.2052 52.9249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.6251 82.8294 40.2203 28.6337 161.347

CAGE analysis