Hb_001410_080

Information

Type -
Description -
Location Contig1410: 118573-120325
Sequence    

Annotation

kegg
ID rcu:RCOM_1312170
description ring finger protein, putative
nr
ID XP_002518854.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q84TF5
description RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1
trembl
ID B9RYN5
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_1312170 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 zinc finger protein rha4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_080 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_000910_030 0.0744516808 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001268_290 0.0758180715 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
4 Hb_005332_160 0.0782090831 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
5 Hb_141194_020 0.0795516727 - - carbohydrate transporter, putative [Ricinus communis]
6 Hb_006386_010 0.0930436811 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
7 Hb_169077_030 0.0941759571 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
8 Hb_003607_090 0.0967972081 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
9 Hb_007370_010 0.1021303467 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
10 Hb_000103_300 0.1050774057 - - PREDICTED: perakine reductase-like [Jatropha curcas]
11 Hb_009122_010 0.1072252546 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_002391_240 0.1077132972 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001534_140 0.1084646386 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
14 Hb_003376_140 0.1084712183 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
15 Hb_006154_010 0.1094120886 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
16 Hb_000659_050 0.1100828427 - - PREDICTED: basic blue protein-like [Jatropha curcas]
17 Hb_012395_060 0.1153928178 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
18 Hb_000193_070 0.1169340337 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
19 Hb_000344_030 0.1172100406 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
20 Hb_004531_160 0.1186385819 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001410_080 Hb_001410_080 Hb_000910_030 Hb_000910_030 Hb_001410_080--Hb_000910_030 Hb_001268_290 Hb_001268_290 Hb_001410_080--Hb_001268_290 Hb_005332_160 Hb_005332_160 Hb_001410_080--Hb_005332_160 Hb_141194_020 Hb_141194_020 Hb_001410_080--Hb_141194_020 Hb_006386_010 Hb_006386_010 Hb_001410_080--Hb_006386_010 Hb_169077_030 Hb_169077_030 Hb_001410_080--Hb_169077_030 Hb_003607_090 Hb_003607_090 Hb_000910_030--Hb_003607_090 Hb_000910_030--Hb_005332_160 Hb_000659_050 Hb_000659_050 Hb_000910_030--Hb_000659_050 Hb_000344_030 Hb_000344_030 Hb_000910_030--Hb_000344_030 Hb_002869_090 Hb_002869_090 Hb_000910_030--Hb_002869_090 Hb_001268_290--Hb_006386_010 Hb_001019_030 Hb_001019_030 Hb_001268_290--Hb_001019_030 Hb_184074_010 Hb_184074_010 Hb_001268_290--Hb_184074_010 Hb_182869_010 Hb_182869_010 Hb_001268_290--Hb_182869_010 Hb_001195_710 Hb_001195_710 Hb_001268_290--Hb_001195_710 Hb_005332_160--Hb_003607_090 Hb_001534_140 Hb_001534_140 Hb_005332_160--Hb_001534_140 Hb_005332_160--Hb_169077_030 Hb_005332_160--Hb_141194_020 Hb_003376_140 Hb_003376_140 Hb_141194_020--Hb_003376_140 Hb_141194_020--Hb_169077_030 Hb_007370_010 Hb_007370_010 Hb_141194_020--Hb_007370_010 Hb_141194_020--Hb_000910_030 Hb_006386_010--Hb_001019_030 Hb_006386_010--Hb_000910_030 Hb_006386_010--Hb_000344_030 Hb_006386_010--Hb_001195_710 Hb_169077_030--Hb_007370_010 Hb_012395_060 Hb_012395_060 Hb_169077_030--Hb_012395_060 Hb_000152_570 Hb_000152_570 Hb_169077_030--Hb_000152_570 Hb_006154_010 Hb_006154_010 Hb_169077_030--Hb_006154_010 Hb_000193_070 Hb_000193_070 Hb_169077_030--Hb_000193_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.63653 1.24358 9.58952 0.0324378 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.73484 3.97499

CAGE analysis