Hb_001410_130

Information

Type -
Description -
Location Contig1410: 202551-204841
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10880g
description POPTRDRAFT_709134; hypothetical protein
nr
ID XP_002297967.2
description hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID B9GL33
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10880g PE=4 SV=2
Gene Ontology
ID GO:0006950
description b2 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11112: 202298-204729
cDNA
(Sanger)
(ID:Location)		 021_K24.ab1: 202585-203316

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_130 0.0 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
2 Hb_000941_080 0.0501813395 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
3 Hb_001009_090 0.0656351151 - - CDK protein [Hevea brasiliensis]
4 Hb_001911_010 0.0726528347 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
5 Hb_006054_030 0.0829429632 - - PREDICTED: protein GPR107-like [Jatropha curcas]
6 Hb_002119_090 0.083393375 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
7 Hb_044653_020 0.0849582926 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
8 Hb_011249_060 0.0861830834 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
9 Hb_020805_150 0.0862901719 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000421_110 0.0876290829 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
11 Hb_159295_010 0.0887707515 - - hypothetical protein RCOM_1520720 [Ricinus communis]
12 Hb_006615_030 0.0897309842 - - prolyl oligopeptidase family protein [Populus trichocarpa]
13 Hb_004526_010 0.0964785437 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
14 Hb_000460_060 0.0971689324 - - importin beta-1, putative [Ricinus communis]
15 Hb_002897_050 0.0975991912 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
16 Hb_004785_030 0.0984745859 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
17 Hb_000649_250 0.0989973319 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
18 Hb_007031_040 0.0996522013 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
19 Hb_001257_100 0.0997655345 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
20 Hb_005834_040 0.0999480928 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001410_130 Hb_001410_130 Hb_000941_080 Hb_000941_080 Hb_001410_130--Hb_000941_080 Hb_001009_090 Hb_001009_090 Hb_001410_130--Hb_001009_090 Hb_001911_010 Hb_001911_010 Hb_001410_130--Hb_001911_010 Hb_006054_030 Hb_006054_030 Hb_001410_130--Hb_006054_030 Hb_002119_090 Hb_002119_090 Hb_001410_130--Hb_002119_090 Hb_044653_020 Hb_044653_020 Hb_001410_130--Hb_044653_020 Hb_000941_080--Hb_006054_030 Hb_000941_080--Hb_001911_010 Hb_000941_080--Hb_001009_090 Hb_000941_080--Hb_002119_090 Hb_000270_230 Hb_000270_230 Hb_000941_080--Hb_000270_230 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000163_230 Hb_000163_230 Hb_001009_090--Hb_000163_230 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_000186_200 Hb_000186_200 Hb_001009_090--Hb_000186_200 Hb_159295_010 Hb_159295_010 Hb_001911_010--Hb_159295_010 Hb_007031_040 Hb_007031_040 Hb_001911_010--Hb_007031_040 Hb_002248_120 Hb_002248_120 Hb_001911_010--Hb_002248_120 Hb_000421_110 Hb_000421_110 Hb_001911_010--Hb_000421_110 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_000069_780 Hb_000069_780 Hb_006054_030--Hb_000069_780 Hb_006054_030--Hb_000270_230 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_004785_030 Hb_004785_030 Hb_002119_090--Hb_004785_030 Hb_000700_060 Hb_000700_060 Hb_002119_090--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_002119_090--Hb_000069_130 Hb_006738_050 Hb_006738_050 Hb_002119_090--Hb_006738_050 Hb_001257_100 Hb_001257_100 Hb_002119_090--Hb_001257_100 Hb_002284_170 Hb_002284_170 Hb_002119_090--Hb_002284_170 Hb_012368_100 Hb_012368_100 Hb_044653_020--Hb_012368_100 Hb_000896_060 Hb_000896_060 Hb_044653_020--Hb_000896_060 Hb_044653_020--Hb_004785_030 Hb_000117_070 Hb_000117_070 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
197.866 1005.73 461.359 415.981 254.979 210.977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.766 110.738 222.238 263.935 298.446

CAGE analysis