Hb_001411_100

Information

Type -
Description -
Location Contig1411: 165997-169588
Sequence    

Annotation

kegg
ID rcu:RCOM_1316740
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207)
nr
ID XP_002518990.1
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q38908
description Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2
trembl
ID B9RZ21
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_1316740 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11131: 166133-169636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001411_100 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
2 Hb_000685_140 0.0756275334 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
3 Hb_000600_080 0.1064225746 - - -
4 Hb_000101_320 0.1085259755 - - -
5 Hb_028872_100 0.1098910539 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
6 Hb_001452_090 0.1175913461 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
7 Hb_000417_150 0.1287605299 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
8 Hb_031949_010 0.1433741405 - - -
9 Hb_000866_390 0.1449199656 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
10 Hb_005470_040 0.146696498 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
11 Hb_000061_110 0.1505557019 - - -
12 Hb_003649_030 0.1507593397 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
13 Hb_008834_010 0.1508355206 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
14 Hb_072173_010 0.1545197966 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
15 Hb_000059_080 0.1568681343 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
16 Hb_011242_070 0.1611972959 - - beta-cyanoalanine synthase [Hevea brasiliensis]
17 Hb_067345_020 0.1676290461 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
18 Hb_000009_390 0.1684652093 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
19 Hb_002815_040 0.1686407218 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
20 Hb_026053_030 0.1691929891 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_001411_100 Hb_001411_100 Hb_000685_140 Hb_000685_140 Hb_001411_100--Hb_000685_140 Hb_000600_080 Hb_000600_080 Hb_001411_100--Hb_000600_080 Hb_000101_320 Hb_000101_320 Hb_001411_100--Hb_000101_320 Hb_028872_100 Hb_028872_100 Hb_001411_100--Hb_028872_100 Hb_001452_090 Hb_001452_090 Hb_001411_100--Hb_001452_090 Hb_000417_150 Hb_000417_150 Hb_001411_100--Hb_000417_150 Hb_000685_140--Hb_000101_320 Hb_000685_140--Hb_028872_100 Hb_000685_140--Hb_001452_090 Hb_000685_140--Hb_000600_080 Hb_008834_010 Hb_008834_010 Hb_000685_140--Hb_008834_010 Hb_072173_010 Hb_072173_010 Hb_000600_080--Hb_072173_010 Hb_000600_080--Hb_000101_320 Hb_031949_010 Hb_031949_010 Hb_000600_080--Hb_031949_010 Hb_000959_370 Hb_000959_370 Hb_000600_080--Hb_000959_370 Hb_000101_320--Hb_001452_090 Hb_000101_320--Hb_008834_010 Hb_000101_320--Hb_028872_100 Hb_000009_390 Hb_000009_390 Hb_000101_320--Hb_000009_390 Hb_000767_010 Hb_000767_010 Hb_028872_100--Hb_000767_010 Hb_028872_100--Hb_000417_150 Hb_005306_020 Hb_005306_020 Hb_028872_100--Hb_005306_020 Hb_001452_090--Hb_028872_100 Hb_001452_090--Hb_000009_390 Hb_001452_090--Hb_008834_010 Hb_026053_030 Hb_026053_030 Hb_000417_150--Hb_026053_030 Hb_004007_230 Hb_004007_230 Hb_000417_150--Hb_004007_230 Hb_000417_150--Hb_031949_010 Hb_000044_050 Hb_000044_050 Hb_000417_150--Hb_000044_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 27.405 2.49271 7.53618 0 0.0150702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.313317 0.523739 0 21.7339 45.5978

CAGE analysis