Hb_001411_140

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig1411: 218733-219827
Sequence    

Annotation

kegg
ID vvi:100241240
description trihelix transcription factor ASIL2-like
nr
ID XP_012068832.1
description PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067L990
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11137: 218971-220242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001411_140 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
2 Hb_002307_270 0.0782738588 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_001405_160 0.0991045648 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
4 Hb_000836_380 0.1032934975 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
5 Hb_000152_330 0.1046870866 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
6 Hb_000951_130 0.1051762955 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
7 Hb_000753_230 0.1057830847 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
8 Hb_010222_070 0.109908182 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
9 Hb_000347_400 0.1105495695 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
10 Hb_066920_030 0.1107665053 - - PREDICTED: adagio protein 1 [Jatropha curcas]
11 Hb_003747_210 0.1132657863 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
12 Hb_000173_470 0.1139877537 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
13 Hb_000347_390 0.1141062565 - - PREDICTED: exportin-T [Jatropha curcas]
14 Hb_028487_140 0.1170007677 - - PREDICTED: myosin-binding protein 2 [Jatropha curcas]
15 Hb_001723_100 0.121385393 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
16 Hb_000252_210 0.1215639519 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
17 Hb_000997_180 0.1236206564 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009627_030 0.1236785604 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
19 Hb_003688_180 0.1242975806 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_007850_090 0.1249828902 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001411_140 Hb_001411_140 Hb_002307_270 Hb_002307_270 Hb_001411_140--Hb_002307_270 Hb_001405_160 Hb_001405_160 Hb_001411_140--Hb_001405_160 Hb_000836_380 Hb_000836_380 Hb_001411_140--Hb_000836_380 Hb_000152_330 Hb_000152_330 Hb_001411_140--Hb_000152_330 Hb_000951_130 Hb_000951_130 Hb_001411_140--Hb_000951_130 Hb_000753_230 Hb_000753_230 Hb_001411_140--Hb_000753_230 Hb_002307_270--Hb_000836_380 Hb_000964_130 Hb_000964_130 Hb_002307_270--Hb_000964_130 Hb_002307_270--Hb_001405_160 Hb_001217_050 Hb_001217_050 Hb_002307_270--Hb_001217_050 Hb_000173_470 Hb_000173_470 Hb_002307_270--Hb_000173_470 Hb_001473_110 Hb_001473_110 Hb_001405_160--Hb_001473_110 Hb_000347_390 Hb_000347_390 Hb_001405_160--Hb_000347_390 Hb_001405_160--Hb_000836_380 Hb_000347_400 Hb_000347_400 Hb_001405_160--Hb_000347_400 Hb_000017_220 Hb_000017_220 Hb_001405_160--Hb_000017_220 Hb_000836_380--Hb_000017_220 Hb_000028_130 Hb_000028_130 Hb_000836_380--Hb_000028_130 Hb_004435_030 Hb_004435_030 Hb_000836_380--Hb_004435_030 Hb_004916_010 Hb_004916_010 Hb_000836_380--Hb_004916_010 Hb_000270_120 Hb_000270_120 Hb_000152_330--Hb_000270_120 Hb_000656_390 Hb_000656_390 Hb_000152_330--Hb_000656_390 Hb_000152_330--Hb_000951_130 Hb_000152_330--Hb_000173_470 Hb_001723_100 Hb_001723_100 Hb_000152_330--Hb_001723_100 Hb_000951_130--Hb_000656_390 Hb_000951_130--Hb_001723_100 Hb_020178_040 Hb_020178_040 Hb_000951_130--Hb_020178_040 Hb_000951_130--Hb_000173_470 Hb_000951_130--Hb_000347_400 Hb_002272_030 Hb_002272_030 Hb_000951_130--Hb_002272_030 Hb_000753_230--Hb_000173_470 Hb_003688_180 Hb_003688_180 Hb_000753_230--Hb_003688_180 Hb_066920_030 Hb_066920_030 Hb_000753_230--Hb_066920_030 Hb_038574_010 Hb_038574_010 Hb_000753_230--Hb_038574_010 Hb_017387_010 Hb_017387_010 Hb_000753_230--Hb_017387_010 Hb_000753_230--Hb_020178_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.54488 37.8286 7.64488 25.3495 6.07594 10.985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7334 13.9719 22.2994 17.1077 14.8195

CAGE analysis