Hb_001411_150

Information

Type -
Description -
Location Contig1411: 222495-223981
Sequence    

Annotation

kegg
ID tcc:TCM_029211
description Dormancy/auxin associated family protein, putative
nr
ID XP_007024723.1
description Dormancy/auxin associated family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GBU9
description Dormancy/auxin associated family protein, putative OS=Theobroma cacao GN=TCM_029211 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11138: 222983-223520 , PASA_asmbl_11139: 222488-223864 , PASA_asmbl_11140: 222913-223515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001411_150 0.0 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
2 Hb_007383_050 0.0397156539 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
3 Hb_009189_010 0.0766895106 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
4 Hb_001289_030 0.0906657372 - - syntaxin, plant, putative [Ricinus communis]
5 Hb_004267_070 0.0953307712 - - latex allene oxide synthase [Hevea brasiliensis]
6 Hb_001168_100 0.0971260802 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
7 Hb_089140_020 0.1036947869 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_003582_020 0.1041486438 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
9 Hb_025477_020 0.1042069048 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
10 Hb_073870_020 0.1060493364 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
11 Hb_000347_370 0.1075084838 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
12 Hb_000347_360 0.1110728451 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
13 Hb_004531_010 0.1111664454 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
14 Hb_000210_150 0.114461892 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_002922_010 0.1196353977 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
16 Hb_007433_020 0.1213051625 - - hypothetical protein VITISV_005320 [Vitis vinifera]
17 Hb_009683_010 0.1217295195 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_008667_020 0.122817305 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
19 Hb_009247_020 0.1235688739 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
20 Hb_035391_010 0.12384157 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_001411_150 Hb_001411_150 Hb_007383_050 Hb_007383_050 Hb_001411_150--Hb_007383_050 Hb_009189_010 Hb_009189_010 Hb_001411_150--Hb_009189_010 Hb_001289_030 Hb_001289_030 Hb_001411_150--Hb_001289_030 Hb_004267_070 Hb_004267_070 Hb_001411_150--Hb_004267_070 Hb_001168_100 Hb_001168_100 Hb_001411_150--Hb_001168_100 Hb_089140_020 Hb_089140_020 Hb_001411_150--Hb_089140_020 Hb_007383_050--Hb_001168_100 Hb_007383_050--Hb_009189_010 Hb_007383_050--Hb_004267_070 Hb_000347_370 Hb_000347_370 Hb_007383_050--Hb_000347_370 Hb_007383_050--Hb_089140_020 Hb_073870_020 Hb_073870_020 Hb_009189_010--Hb_073870_020 Hb_002849_030 Hb_002849_030 Hb_009189_010--Hb_002849_030 Hb_000347_360 Hb_000347_360 Hb_009189_010--Hb_000347_360 Hb_009189_010--Hb_001289_030 Hb_009683_010 Hb_009683_010 Hb_001289_030--Hb_009683_010 Hb_003582_020 Hb_003582_020 Hb_001289_030--Hb_003582_020 Hb_025477_020 Hb_025477_020 Hb_001289_030--Hb_025477_020 Hb_001289_030--Hb_007383_050 Hb_004267_070--Hb_001168_100 Hb_004267_070--Hb_000347_370 Hb_000210_150 Hb_000210_150 Hb_004267_070--Hb_000210_150 Hb_004267_070--Hb_089140_020 Hb_001168_100--Hb_000347_370 Hb_001168_100--Hb_089140_020 Hb_002475_110 Hb_002475_110 Hb_001168_100--Hb_002475_110 Hb_189242_010 Hb_189242_010 Hb_089140_020--Hb_189242_010 Hb_055706_010 Hb_055706_010 Hb_089140_020--Hb_055706_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197894 227.424 31.2031 38.0582 0.258606 0.320549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0441829 0 0 13.5228 5.94491

CAGE analysis