Hb_001414_010

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig1414: 3525-11234
Sequence    

Annotation

kegg
ID rcu:RCOM_0053570
description two-component sensor histidine kinase bacteria, putative
nr
ID XP_002533196.1
description two-component sensor histidine kinase bacteria, putative [Ricinus communis]
swissprot
ID Q9ZWJ9
description Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
trembl
ID B9T4M7
description Two-component sensor histidine kinase bacteria, putative OS=Ricinus communis GN=RCOM_0053570 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr14 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11150: 3661-11246 , PASA_asmbl_11151: 8882-9148 , PASA_asmbl_11152: 9876-10033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_010 0.0 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
2 Hb_021977_010 0.0504540119 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
3 Hb_003661_010 0.0594250187 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
4 Hb_009476_120 0.0611811949 - - Clathrin heavy chain 1 [Glycine soja]
5 Hb_008165_020 0.0622201727 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
6 Hb_000300_030 0.0634333336 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
7 Hb_160608_010 0.0659165099 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
8 Hb_005305_130 0.0659955748 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
9 Hb_001998_210 0.069763565 - - unnamed protein product [Coffea canephora]
10 Hb_002809_160 0.073175077 - - PREDICTED: protein FAM63A [Jatropha curcas]
11 Hb_003964_110 0.0747520376 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
12 Hb_000172_360 0.0754907465 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
13 Hb_001507_050 0.0769171492 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000844_050 0.0793935459 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
15 Hb_000331_100 0.0808959764 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
16 Hb_000015_200 0.0824392046 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
17 Hb_000599_360 0.0834090279 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_011457_140 0.0838419443 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
19 Hb_048476_080 0.0850676792 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
20 Hb_009078_020 0.0855257228 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]

Gene co-expression network

sample Hb_001414_010 Hb_001414_010 Hb_021977_010 Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_003661_010 Hb_003661_010 Hb_001414_010--Hb_003661_010 Hb_009476_120 Hb_009476_120 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_001414_010--Hb_160608_010 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_021977_010--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_021977_010--Hb_001998_220 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060 Hb_000844_050 Hb_000844_050 Hb_003661_010--Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_003661_010--Hb_000300_030 Hb_003661_010--Hb_160608_010 Hb_003680_020 Hb_003680_020 Hb_003661_010--Hb_003680_020 Hb_009476_120--Hb_008165_020 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_011457_140 Hb_011457_140 Hb_000300_030--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_000300_030--Hb_000358_220 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_005305_130 Hb_005305_130 Hb_160608_010--Hb_005305_130 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.8411 21.3399 19.7336 21.7366 7.81363 7.47346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44241 4.04169 5.1973 16.1379 22.8153

CAGE analysis