Hb_001414_030

Information

Type -
Description -
Location Contig1414: 27122-30710
Sequence    

Annotation

kegg
ID rcu:RCOM_0053530
description aspartate semialdehyde dehydrogenase, putative (EC:1.2.1.11)
nr
ID XP_012072319.1
description PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
swissprot
ID Q55512
description Aspartate-semialdehyde dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asd PE=3 SV=2
trembl
ID A0A067KPI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04769 PE=3 SV=1
Gene Ontology
ID GO:0005739
description aspartate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11160: 27133-30678
cDNA
(Sanger)
(ID:Location)		 031_I24.ab1: 27136-28575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_030 0.0 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
2 Hb_000329_760 0.0814252882 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
3 Hb_016522_010 0.0949116749 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
4 Hb_000982_080 0.0972184348 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
5 Hb_034380_020 0.0979771288 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
6 Hb_001357_300 0.0986129568 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_011942_090 0.1009510936 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X1 [Jatropha curcas]
8 Hb_015183_060 0.1084198589 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
9 Hb_005914_170 0.1086109601 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
10 Hb_001195_200 0.1112263342 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
11 Hb_003376_250 0.1112493767 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
12 Hb_000483_260 0.1119570095 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
13 Hb_002014_020 0.1128521862 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
14 Hb_001545_170 0.1135528751 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
15 Hb_012490_070 0.1164645652 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003098_020 0.1171906351 - - 40S ribosomal protein S5B [Hevea brasiliensis]
17 Hb_008232_010 0.1186607303 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
18 Hb_002311_340 0.1189053018 - - phospholipase d zeta, putative [Ricinus communis]
19 Hb_000096_160 0.1197523253 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
20 Hb_000258_260 0.1203271878 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001414_030 Hb_001414_030 Hb_000329_760 Hb_000329_760 Hb_001414_030--Hb_000329_760 Hb_016522_010 Hb_016522_010 Hb_001414_030--Hb_016522_010 Hb_000982_080 Hb_000982_080 Hb_001414_030--Hb_000982_080 Hb_034380_020 Hb_034380_020 Hb_001414_030--Hb_034380_020 Hb_001357_300 Hb_001357_300 Hb_001414_030--Hb_001357_300 Hb_011942_090 Hb_011942_090 Hb_001414_030--Hb_011942_090 Hb_002631_030 Hb_002631_030 Hb_000329_760--Hb_002631_030 Hb_012490_070 Hb_012490_070 Hb_000329_760--Hb_012490_070 Hb_001195_200 Hb_001195_200 Hb_000329_760--Hb_001195_200 Hb_000258_260 Hb_000258_260 Hb_000329_760--Hb_000258_260 Hb_002014_020 Hb_002014_020 Hb_000329_760--Hb_002014_020 Hb_000227_070 Hb_000227_070 Hb_016522_010--Hb_000227_070 Hb_001214_090 Hb_001214_090 Hb_016522_010--Hb_001214_090 Hb_000510_240 Hb_000510_240 Hb_016522_010--Hb_000510_240 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_000210_120 Hb_000210_120 Hb_016522_010--Hb_000210_120 Hb_003376_250 Hb_003376_250 Hb_000982_080--Hb_003376_250 Hb_011344_190 Hb_011344_190 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_000982_080--Hb_001195_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_005551_040 Hb_005551_040 Hb_034380_020--Hb_005551_040 Hb_004889_010 Hb_004889_010 Hb_034380_020--Hb_004889_010 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_003697_040 Hb_003697_040 Hb_034380_020--Hb_003697_040 Hb_001507_040 Hb_001507_040 Hb_001357_300--Hb_001507_040 Hb_000483_260 Hb_000483_260 Hb_001357_300--Hb_000483_260 Hb_001357_300--Hb_034380_020 Hb_000676_150 Hb_000676_150 Hb_001357_300--Hb_000676_150 Hb_001726_020 Hb_001726_020 Hb_001357_300--Hb_001726_020 Hb_011942_090--Hb_000676_150 Hb_000291_080 Hb_000291_080 Hb_011942_090--Hb_000291_080 Hb_000820_090 Hb_000820_090 Hb_011942_090--Hb_000820_090 Hb_006420_100 Hb_006420_100 Hb_011942_090--Hb_006420_100 Hb_002111_040 Hb_002111_040 Hb_011942_090--Hb_002111_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0871 7.78618 12.1612 11.8412 6.36555 12.7542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5351 28.0237 25.2212 32.6451 17.1955

CAGE analysis