Hb_001414_070

Information

Type -
Description -
Location Contig1414: 59094-65086
Sequence    

Annotation

kegg
ID mtr:MTR_2g030270
description Zinc finger protein GIS2
nr
ID XP_003594532.1
description Zinc finger protein GIS2 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_070 0.0 - - Zinc finger protein GIS2 [Medicago truncatula]
2 Hb_007138_020 0.0001773776 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
3 Hb_014776_010 0.0011266855 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
4 Hb_088508_010 0.0016634604 - - cytochrome P450, putative [Ricinus communis]
5 Hb_014223_030 0.002432771 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
6 Hb_002471_030 0.0028598695 - - PREDICTED: cyclin-J18 [Jatropha curcas]
7 Hb_000245_010 0.005377202 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
8 Hb_000018_080 0.0058690535 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
9 Hb_007292_040 0.0079869071 - - Plastid developmental protein DAG [Theobroma cacao]
10 Hb_000762_100 0.0084166075 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
11 Hb_001140_120 0.0087194681 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
12 Hb_001098_060 0.00957957 - - -
13 Hb_005858_010 0.011936934 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
14 Hb_003203_010 0.0121866294 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
15 Hb_012758_020 0.0138625685 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_004586_100 0.0167179061 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
17 Hb_028447_010 0.017204741 - - hypothetical protein RCOM_1967580 [Ricinus communis]
18 Hb_002383_010 0.0181865688 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_001205_260 0.0187686374 - - DWNN domain isoform 2 [Theobroma cacao]
20 Hb_000005_150 0.019208318 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_001414_070 Hb_001414_070 Hb_007138_020 Hb_007138_020 Hb_001414_070--Hb_007138_020 Hb_014776_010 Hb_014776_010 Hb_001414_070--Hb_014776_010 Hb_088508_010 Hb_088508_010 Hb_001414_070--Hb_088508_010 Hb_014223_030 Hb_014223_030 Hb_001414_070--Hb_014223_030 Hb_002471_030 Hb_002471_030 Hb_001414_070--Hb_002471_030 Hb_000245_010 Hb_000245_010 Hb_001414_070--Hb_000245_010 Hb_007138_020--Hb_014776_010 Hb_007138_020--Hb_088508_010 Hb_007138_020--Hb_014223_030 Hb_007138_020--Hb_002471_030 Hb_007138_020--Hb_000245_010 Hb_014776_010--Hb_088508_010 Hb_014776_010--Hb_014223_030 Hb_014776_010--Hb_002471_030 Hb_000018_080 Hb_000018_080 Hb_014776_010--Hb_000018_080 Hb_088508_010--Hb_014223_030 Hb_088508_010--Hb_002471_030 Hb_088508_010--Hb_000018_080 Hb_014223_030--Hb_002471_030 Hb_014223_030--Hb_000018_080 Hb_002471_030--Hb_000018_080 Hb_000245_010--Hb_014776_010 Hb_005858_010 Hb_005858_010 Hb_000245_010--Hb_005858_010 Hb_000245_010--Hb_088508_010 Hb_000245_010--Hb_014223_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0609222 0.113017 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis