Hb_001414_120

Information

Type -
Description -
Location Contig1414: 111186-113560
Sequence    

Annotation

kegg
ID rcu:RCOM_0598090
description Benzoate carboxyl methyltransferase, putative (EC:2.1.1.141)
nr
ID XP_002526004.1
description Benzoate carboxyl methyltransferase, putative [Ricinus communis]
swissprot
ID Q9FKD0
description Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=3 SV=1
trembl
ID B9SJ35
description Benzoate carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_0598090 PE=4 SV=1
Gene Ontology
ID GO:0030795
description s-adenosyl-l-methionine-dependent methyltransferases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11165: 111295-111764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_120 0.0 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
2 Hb_000304_040 0.0475916291 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
3 Hb_004458_010 0.0951306995 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
4 Hb_000769_050 0.1072186761 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
5 Hb_001957_050 0.1072323024 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000167_090 0.113397013 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002548_010 0.1216071954 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
8 Hb_000373_110 0.12963462 - - Nodulin, putative [Ricinus communis]
9 Hb_003925_130 0.1339512174 - - glutathione s-transferase, putative [Ricinus communis]
10 Hb_002422_010 0.1351886961 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
11 Hb_001104_250 0.1380946877 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
12 Hb_006590_030 0.1405391342 - - unknown [Populus trichocarpa]
13 Hb_002869_040 0.1410414605 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
14 Hb_039410_010 0.1419436778 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
15 Hb_023536_020 0.1426433606 - - Nicotianamine synthase, putative [Ricinus communis]
16 Hb_005040_010 0.1533656961 - - hypothetical protein RCOM_1110360 [Ricinus communis]
17 Hb_001808_010 0.1538220979 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
18 Hb_168031_010 0.1541383233 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
19 Hb_003012_010 0.1557721313 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000203_090 0.1589140397 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]

Gene co-expression network

sample Hb_001414_120 Hb_001414_120 Hb_000304_040 Hb_000304_040 Hb_001414_120--Hb_000304_040 Hb_004458_010 Hb_004458_010 Hb_001414_120--Hb_004458_010 Hb_000769_050 Hb_000769_050 Hb_001414_120--Hb_000769_050 Hb_001957_050 Hb_001957_050 Hb_001414_120--Hb_001957_050 Hb_000167_090 Hb_000167_090 Hb_001414_120--Hb_000167_090 Hb_002548_010 Hb_002548_010 Hb_001414_120--Hb_002548_010 Hb_000304_040--Hb_004458_010 Hb_003925_130 Hb_003925_130 Hb_000304_040--Hb_003925_130 Hb_000304_040--Hb_001957_050 Hb_000304_040--Hb_000769_050 Hb_000373_110 Hb_000373_110 Hb_000304_040--Hb_000373_110 Hb_004458_010--Hb_001957_050 Hb_005040_010 Hb_005040_010 Hb_004458_010--Hb_005040_010 Hb_003602_080 Hb_003602_080 Hb_004458_010--Hb_003602_080 Hb_006590_030 Hb_006590_030 Hb_004458_010--Hb_006590_030 Hb_001104_250 Hb_001104_250 Hb_000769_050--Hb_001104_250 Hb_000769_050--Hb_002548_010 Hb_123887_010 Hb_123887_010 Hb_000769_050--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_000769_050--Hb_000152_090 Hb_000769_050--Hb_000167_090 Hb_003442_020 Hb_003442_020 Hb_000769_050--Hb_003442_020 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_001957_050--Hb_006590_030 Hb_001957_050--Hb_005040_010 Hb_001957_050--Hb_000167_090 Hb_039410_010 Hb_039410_010 Hb_001957_050--Hb_039410_010 Hb_002420_030 Hb_002420_030 Hb_001957_050--Hb_002420_030 Hb_000167_090--Hb_002548_010 Hb_000167_090--Hb_039410_010 Hb_000203_090 Hb_000203_090 Hb_000167_090--Hb_000203_090 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_000167_090--Hb_001104_250 Hb_002548_010--Hb_001104_250 Hb_002548_010--Hb_000203_090 Hb_002548_010--Hb_000152_090 Hb_182625_010 Hb_182625_010 Hb_002548_010--Hb_182625_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27768 0.133546 1.87446 0 0.0681378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis