Hb_001414_140

Information

Type -
Description -
Location Contig1414: 143377-146239
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13570g
description POPTRDRAFT_872957; S-adenosyl-L-methionine:carboxyl methyltransferase family protein
nr
ID XP_011024370.1
description PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HJH9
description S-adenosyl-L-methionine:carboxyl methyltransferase family protein OS=Populus trichocarpa GN=POPTR_0008s13570g PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable s-adenosylmethionine-dependent methyltransferase at5g38100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_140 0.0 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
2 Hb_000152_340 0.1330854524 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
3 Hb_009178_020 0.1396444721 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
4 Hb_000953_030 0.1404964169 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
5 Hb_001902_060 0.1415344735 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
6 Hb_000538_010 0.1437497686 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
7 Hb_001638_160 0.1461219503 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
8 Hb_000920_250 0.1471171804 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
9 Hb_002499_070 0.1491742743 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
10 Hb_001189_130 0.1495233762 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
11 Hb_000140_080 0.1507192714 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
12 Hb_000390_220 0.1509552717 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
13 Hb_001053_030 0.1530484176 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
14 Hb_156144_030 0.1545513588 - - hypothetical protein RCOM_0187400 [Ricinus communis]
15 Hb_006501_060 0.156698147 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
16 Hb_000120_570 0.1572550782 - - Mlo protein [Hevea brasiliensis]
17 Hb_000449_050 0.1580871325 - - Protein bem46, putative [Ricinus communis]
18 Hb_000487_420 0.1585102746 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
19 Hb_002477_150 0.159481116 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
20 Hb_000136_090 0.1601561224 - - programmed cell death protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001414_140 Hb_001414_140 Hb_000152_340 Hb_000152_340 Hb_001414_140--Hb_000152_340 Hb_009178_020 Hb_009178_020 Hb_001414_140--Hb_009178_020 Hb_000953_030 Hb_000953_030 Hb_001414_140--Hb_000953_030 Hb_001902_060 Hb_001902_060 Hb_001414_140--Hb_001902_060 Hb_000538_010 Hb_000538_010 Hb_001414_140--Hb_000538_010 Hb_001638_160 Hb_001638_160 Hb_001414_140--Hb_001638_160 Hb_000152_340--Hb_001902_060 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090 Hb_009178_020--Hb_000953_030 Hb_001474_030 Hb_001474_030 Hb_009178_020--Hb_001474_030 Hb_001473_080 Hb_001473_080 Hb_009178_020--Hb_001473_080 Hb_000685_080 Hb_000685_080 Hb_009178_020--Hb_000685_080 Hb_000504_160 Hb_000504_160 Hb_009178_020--Hb_000504_160 Hb_000186_260 Hb_000186_260 Hb_009178_020--Hb_000186_260 Hb_001946_300 Hb_001946_300 Hb_000953_030--Hb_001946_300 Hb_005539_190 Hb_005539_190 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020 Hb_000544_060 Hb_000544_060 Hb_001902_060--Hb_000544_060 Hb_000920_250 Hb_000920_250 Hb_001902_060--Hb_000920_250 Hb_002499_070 Hb_002499_070 Hb_001902_060--Hb_002499_070 Hb_007676_100 Hb_007676_100 Hb_001902_060--Hb_007676_100 Hb_001141_370 Hb_001141_370 Hb_001902_060--Hb_001141_370 Hb_001307_010 Hb_001307_010 Hb_000538_010--Hb_001307_010 Hb_031711_010 Hb_031711_010 Hb_000538_010--Hb_031711_010 Hb_000390_220 Hb_000390_220 Hb_000538_010--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_000538_010--Hb_013394_060 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130 Hb_004970_090 Hb_004970_090 Hb_001638_160--Hb_004970_090 Hb_004916_020 Hb_004916_020 Hb_001638_160--Hb_004916_020 Hb_017491_030 Hb_017491_030 Hb_001638_160--Hb_017491_030 Hb_000218_010 Hb_000218_010 Hb_001638_160--Hb_000218_010 Hb_005355_030 Hb_005355_030 Hb_001638_160--Hb_005355_030 Hb_112798_020 Hb_112798_020 Hb_001638_160--Hb_112798_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43566 4.92242 1.94917 0.631102 5.78022 2.84987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47002 2.26379 0.554739 1.70905 0.463277

CAGE analysis