Hb_001416_050

Information

Type -
Description -
Location Contig1416: 65573-74084
Sequence    

Annotation

kegg
ID vvi:104879515
description uncharacterized LOC104879515
nr
ID XP_009614069.1
description PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A5BM79
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038692 PE=4 SV=1
Gene Ontology
ID GO:0016772
description PREDICTED: uncharacterized protein LOC104107076

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_050 0.0 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
2 Hb_011174_050 0.2028766516 - - -
3 Hb_006111_070 0.2375955619 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
4 Hb_000540_130 0.255224219 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
5 Hb_120762_010 0.2589532961 - - -
6 Hb_000808_080 0.2613272206 - - PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
7 Hb_006816_290 0.2613555727 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
8 Hb_017438_020 0.2630658903 - - -
9 Hb_002400_270 0.2653849876 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
10 Hb_002791_010 0.2656985948 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
11 Hb_002193_010 0.2673519327 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
12 Hb_006371_010 0.2692643616 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
13 Hb_002025_200 0.2713648814 - - -
14 Hb_015884_030 0.2730413948 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
15 Hb_000879_130 0.2730858829 - - -
16 Hb_009355_040 0.2737634234 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001369_370 0.2746118619 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
18 Hb_027073_060 0.2785389456 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
19 Hb_000742_250 0.2795093823 - - Tubulin beta-6 chain [Gossypium arboreum]
20 Hb_006076_020 0.2798090336 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]

Gene co-expression network

sample Hb_001416_050 Hb_001416_050 Hb_011174_050 Hb_011174_050 Hb_001416_050--Hb_011174_050 Hb_006111_070 Hb_006111_070 Hb_001416_050--Hb_006111_070 Hb_000540_130 Hb_000540_130 Hb_001416_050--Hb_000540_130 Hb_120762_010 Hb_120762_010 Hb_001416_050--Hb_120762_010 Hb_000808_080 Hb_000808_080 Hb_001416_050--Hb_000808_080 Hb_006816_290 Hb_006816_290 Hb_001416_050--Hb_006816_290 Hb_028872_050 Hb_028872_050 Hb_011174_050--Hb_028872_050 Hb_011174_050--Hb_006816_290 Hb_005657_010 Hb_005657_010 Hb_011174_050--Hb_005657_010 Hb_000300_380 Hb_000300_380 Hb_011174_050--Hb_000300_380 Hb_001416_040 Hb_001416_040 Hb_011174_050--Hb_001416_040 Hb_015884_030 Hb_015884_030 Hb_006111_070--Hb_015884_030 Hb_000463_140 Hb_000463_140 Hb_006111_070--Hb_000463_140 Hb_000062_150 Hb_000062_150 Hb_006111_070--Hb_000062_150 Hb_024570_010 Hb_024570_010 Hb_006111_070--Hb_024570_010 Hb_012799_030 Hb_012799_030 Hb_006111_070--Hb_012799_030 Hb_000313_060 Hb_000313_060 Hb_006111_070--Hb_000313_060 Hb_001089_060 Hb_001089_060 Hb_000540_130--Hb_001089_060 Hb_000816_100 Hb_000816_100 Hb_000540_130--Hb_000816_100 Hb_000540_130--Hb_006111_070 Hb_004398_030 Hb_004398_030 Hb_000540_130--Hb_004398_030 Hb_001916_100 Hb_001916_100 Hb_000540_130--Hb_001916_100 Hb_002328_040 Hb_002328_040 Hb_000540_130--Hb_002328_040 Hb_034482_030 Hb_034482_030 Hb_120762_010--Hb_034482_030 Hb_001213_130 Hb_001213_130 Hb_120762_010--Hb_001213_130 Hb_120762_010--Hb_004398_030 Hb_000056_040 Hb_000056_040 Hb_120762_010--Hb_000056_040 Hb_000362_020 Hb_000362_020 Hb_120762_010--Hb_000362_020 Hb_120762_010--Hb_006111_070 Hb_005488_060 Hb_005488_060 Hb_000808_080--Hb_005488_060 Hb_008489_020 Hb_008489_020 Hb_000808_080--Hb_008489_020 Hb_001898_090 Hb_001898_090 Hb_000808_080--Hb_001898_090 Hb_009767_090 Hb_009767_090 Hb_000808_080--Hb_009767_090 Hb_001085_250 Hb_001085_250 Hb_000808_080--Hb_001085_250 Hb_000640_320 Hb_000640_320 Hb_000808_080--Hb_000640_320 Hb_006816_290--Hb_001416_040 Hb_000327_240 Hb_000327_240 Hb_006816_290--Hb_000327_240 Hb_002400_270 Hb_002400_270 Hb_006816_290--Hb_002400_270 Hb_002111_050 Hb_002111_050 Hb_006816_290--Hb_002111_050 Hb_001001_160 Hb_001001_160 Hb_006816_290--Hb_001001_160 Hb_007447_010 Hb_007447_010 Hb_006816_290--Hb_007447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30076 0.141331 0.0764252 0 0.593997 0.196558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20194 0.0198608 0.300433 0.0158191 0.418414

CAGE analysis