Hb_001417_050

Information

Type -
Description -
Location Contig1417: 76926-94152
Sequence    

Annotation

kegg
ID rcu:RCOM_1618490
description RNA binding protein, putative
nr
ID XP_012092931.1
description PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
swissprot
ID Q8GXN9
description G patch domain-containing protein TGH OS=Arabidopsis thaliana GN=TGH PE=2 SV=1
trembl
ID A0A067JJA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05834 PE=4 SV=1
Gene Ontology
ID GO:0003723
description g patch domain-containing protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11193: 76967-87973 , PASA_asmbl_11194: 76967-88008 , PASA_asmbl_11196: 89775-94079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001417_050 0.0 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
2 Hb_001493_040 0.0511002722 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
3 Hb_000160_290 0.0570213058 - - unnamed protein product [Vitis vinifera]
4 Hb_010315_090 0.0572016883 - - suppressor of ty, putative [Ricinus communis]
5 Hb_002422_050 0.0599288722 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
6 Hb_006252_020 0.0622319057 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
7 Hb_000796_190 0.0641592017 - - hypothetical protein F383_31148 [Gossypium arboreum]
8 Hb_000768_070 0.0645649543 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
9 Hb_000935_090 0.0646955404 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
10 Hb_000743_040 0.0671780682 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_004453_110 0.0688430489 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
12 Hb_002174_020 0.0688727036 - - ring finger protein, putative [Ricinus communis]
13 Hb_000714_050 0.0699489212 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
14 Hb_001178_150 0.07157892 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
15 Hb_005731_090 0.0719041908 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
16 Hb_000347_570 0.0720112859 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
17 Hb_000329_130 0.0721453693 - - beta-tubulin cofactor d, putative [Ricinus communis]
18 Hb_004429_160 0.0730826266 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
19 Hb_003044_020 0.0737547411 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
20 Hb_004659_080 0.0745752738 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001417_050 Hb_001417_050 Hb_001493_040 Hb_001493_040 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_010315_090 Hb_010315_090 Hb_001417_050--Hb_010315_090 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_006252_020 Hb_006252_020 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_001493_040--Hb_010315_090 Hb_001493_040--Hb_000160_290 Hb_001493_040--Hb_002422_050 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_000329_130 Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_004884_010 Hb_004884_010 Hb_010315_090--Hb_004884_010 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020 Hb_004453_110 Hb_004453_110 Hb_002422_050--Hb_004453_110 Hb_000152_260 Hb_000152_260 Hb_002422_050--Hb_000152_260 Hb_005332_020 Hb_005332_020 Hb_002422_050--Hb_005332_020 Hb_000010_360 Hb_000010_360 Hb_002422_050--Hb_000010_360 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000796_190--Hb_000329_130 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.34 18.2417 7.68954 8.23487 23.4249 24.0973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.96575 6.98383 6.78009 12.1718 12.2303

CAGE analysis