Hb_001417_080

Information

Type -
Description -
Location Contig1417: 119768-120259
Sequence    

Annotation

kegg
ID rcu:RCOM_1618710
description Calmodulin, putative (EC:1.3.1.74)
nr
ID XP_002512001.1
description Calmodulin, putative [Ricinus communis]
swissprot
ID Q9FZ75
description Probable calcium-binding protein CML15 OS=Arabidopsis thaliana GN=CML15 PE=2 SV=1
trembl
ID B9RE62
description Calmodulin, putative OS=Ricinus communis GN=RCOM_1618710 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001417_080 0.0 - - Calmodulin, putative [Ricinus communis]
2 Hb_024399_030 0.2806203785 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_260 0.2820947859 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
4 Hb_033870_010 0.3124315826 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
5 Hb_010812_090 0.3358302844 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
6 Hb_002259_050 0.3483369484 - - unnamed protein product [Vitis vinifera]
7 Hb_002299_020 0.350028783 - - conserved hypothetical protein [Ricinus communis]
8 Hb_056559_010 0.350052342 - - PREDICTED: uncharacterized protein LOC104088595 [Nicotiana tomentosiformis]
9 Hb_006502_040 0.3575512752 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_000032_050 0.3591849343 - - hypothetical protein RCOM_1691130 [Ricinus communis]
11 Hb_000032_240 0.3593234197 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007101_010 0.362152534 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
13 Hb_006376_010 0.3634816933 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
14 Hb_000136_160 0.3660455894 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_000566_020 0.3664730345 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
16 Hb_159191_010 0.3699635928 - - protease inhibitor protein [Hevea brasiliensis]
17 Hb_000445_220 0.3752209017 - - -
18 Hb_001922_180 0.3759097542 - - hevamine-A precursor, putative [Ricinus communis]
19 Hb_002081_170 0.37993577 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_005298_040 0.3804326401 - - hypothetical protein CICLE_v10003181mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_001417_080 Hb_001417_080 Hb_024399_030 Hb_024399_030 Hb_001417_080--Hb_024399_030 Hb_000329_260 Hb_000329_260 Hb_001417_080--Hb_000329_260 Hb_033870_010 Hb_033870_010 Hb_001417_080--Hb_033870_010 Hb_010812_090 Hb_010812_090 Hb_001417_080--Hb_010812_090 Hb_002259_050 Hb_002259_050 Hb_001417_080--Hb_002259_050 Hb_002299_020 Hb_002299_020 Hb_001417_080--Hb_002299_020 Hb_005298_040 Hb_005298_040 Hb_024399_030--Hb_005298_040 Hb_000445_190 Hb_000445_190 Hb_024399_030--Hb_000445_190 Hb_002893_120 Hb_002893_120 Hb_024399_030--Hb_002893_120 Hb_007809_090 Hb_007809_090 Hb_024399_030--Hb_007809_090 Hb_000108_100 Hb_000108_100 Hb_024399_030--Hb_000108_100 Hb_000329_260--Hb_033870_010 Hb_001979_030 Hb_001979_030 Hb_000329_260--Hb_001979_030 Hb_001864_090 Hb_001864_090 Hb_000329_260--Hb_001864_090 Hb_000136_160 Hb_000136_160 Hb_000329_260--Hb_000136_160 Hb_000032_050 Hb_000032_050 Hb_000329_260--Hb_000032_050 Hb_000895_080 Hb_000895_080 Hb_033870_010--Hb_000895_080 Hb_033870_010--Hb_000032_050 Hb_033870_010--Hb_001864_090 Hb_033546_020 Hb_033546_020 Hb_033870_010--Hb_033546_020 Hb_006502_040 Hb_006502_040 Hb_010812_090--Hb_006502_040 Hb_003992_120 Hb_003992_120 Hb_010812_090--Hb_003992_120 Hb_010128_110 Hb_010128_110 Hb_010812_090--Hb_010128_110 Hb_000567_280 Hb_000567_280 Hb_010812_090--Hb_000567_280 Hb_000861_050 Hb_000861_050 Hb_010812_090--Hb_000861_050 Hb_074197_010 Hb_074197_010 Hb_010812_090--Hb_074197_010 Hb_081207_010 Hb_081207_010 Hb_002259_050--Hb_081207_010 Hb_175450_010 Hb_175450_010 Hb_002259_050--Hb_175450_010 Hb_000445_220 Hb_000445_220 Hb_002259_050--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002259_050--Hb_006922_040 Hb_002431_060 Hb_002431_060 Hb_002259_050--Hb_002431_060 Hb_002228_090 Hb_002228_090 Hb_002259_050--Hb_002228_090 Hb_070268_010 Hb_070268_010 Hb_002299_020--Hb_070268_010 Hb_000179_160 Hb_000179_160 Hb_002299_020--Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_002299_020--Hb_007218_030 Hb_002081_170 Hb_002081_170 Hb_002299_020--Hb_002081_170 Hb_019863_020 Hb_019863_020 Hb_002299_020--Hb_019863_020 Hb_044555_010 Hb_044555_010 Hb_002299_020--Hb_044555_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150833 0 0 0.136068 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.413502 0.108281 0 0 0

CAGE analysis