Hb_001418_050

Information

Type -
Description -
Location Contig1418: 111719-115819
Sequence    

Annotation

kegg
ID rcu:RCOM_1300600
description hypothetical protein
nr
ID XP_012068476.1
description PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
swissprot
ID Q6F2Y7
description Chaperone protein ClpB1 OS=Oryza sativa subsp. japonica GN=CLPB1 PE=2 SV=1
trembl
ID A0A067L9D6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03245 PE=4 SV=1
Gene Ontology
ID GO:0016787
description double clp-n motif-containing p-loop nucleoside triphosphate hydrolases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11212: 111627-112195 , PASA_asmbl_11213: 112463-112992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001418_050 0.0 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
2 Hb_000098_230 0.0806850265 - - Potassium channel AKT2/3, putative [Ricinus communis]
3 Hb_007441_100 0.0912243007 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
4 Hb_000847_110 0.0960747333 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000378_030 0.1045723628 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001541_170 0.1104568705 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
7 Hb_001500_020 0.1108956044 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000614_120 0.1128664021 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
9 Hb_000087_190 0.1156762379 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
10 Hb_000206_270 0.1161721283 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_000920_120 0.1162661989 - - -
12 Hb_006351_050 0.1178397738 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
13 Hb_005215_050 0.11956264 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
14 Hb_135757_030 0.1226705768 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
15 Hb_007919_010 0.1228587357 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012217_010 0.1239283364 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
17 Hb_001369_190 0.1266646452 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
18 Hb_002053_020 0.1276560342 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
19 Hb_084304_010 0.1276731367 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
20 Hb_003175_120 0.1286164202 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001418_050 Hb_001418_050 Hb_000098_230 Hb_000098_230 Hb_001418_050--Hb_000098_230 Hb_007441_100 Hb_007441_100 Hb_001418_050--Hb_007441_100 Hb_000847_110 Hb_000847_110 Hb_001418_050--Hb_000847_110 Hb_000378_030 Hb_000378_030 Hb_001418_050--Hb_000378_030 Hb_001541_170 Hb_001541_170 Hb_001418_050--Hb_001541_170 Hb_001500_020 Hb_001500_020 Hb_001418_050--Hb_001500_020 Hb_000098_230--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_007919_010 Hb_007919_010 Hb_000098_230--Hb_007919_010 Hb_000422_060 Hb_000422_060 Hb_000098_230--Hb_000422_060 Hb_000098_230--Hb_007441_100 Hb_012217_010 Hb_012217_010 Hb_007441_100--Hb_012217_010 Hb_007441_100--Hb_000847_110 Hb_007441_100--Hb_000378_030 Hb_007441_100--Hb_001541_170 Hb_000847_110--Hb_012217_010 Hb_000847_110--Hb_001541_170 Hb_000847_110--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_000847_110--Hb_000087_190 Hb_000378_030--Hb_000098_230 Hb_000378_030--Hb_000422_060 Hb_032299_020 Hb_032299_020 Hb_000378_030--Hb_032299_020 Hb_011314_010 Hb_011314_010 Hb_000378_030--Hb_011314_010 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040 Hb_006351_050 Hb_006351_050 Hb_001500_020--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_001500_020--Hb_180088_010 Hb_003598_050 Hb_003598_050 Hb_001500_020--Hb_003598_050 Hb_112950_010 Hb_112950_010 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.573501 3.18138 2.69676 21.1759 0.0703229 0.244933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0140359 0.0110453 0 0.455527 2.92384

CAGE analysis