Hb_001418_060

Information

Type -
Description -
Location Contig1418: 124914-126166
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11217: 125312-127197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001418_060 0.0 - - -
2 Hb_001385_090 0.1756846567 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
3 Hb_130134_020 0.2195723454 - - -
4 Hb_060054_010 0.2256727009 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
5 Hb_074979_030 0.2293442002 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
6 Hb_000589_230 0.230637223 - - unknown [Picea sitchensis]
7 Hb_005016_070 0.2425465747 - - -
8 Hb_115045_010 0.2478148484 - - ATP binding protein, putative [Ricinus communis]
9 Hb_070385_010 0.2569138227 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
10 Hb_000523_100 0.2677202415 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
11 Hb_130134_030 0.2685755591 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
12 Hb_011794_020 0.27267106 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000003_180 0.2742586891 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000295_090 0.2757962785 - - Clathrin light chain 2 [Glycine soja]
15 Hb_000066_180 0.2769707673 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
16 Hb_115578_010 0.2815165404 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
17 Hb_001231_070 0.2824471025 - - -
18 Hb_074701_010 0.2842384042 - - -
19 Hb_000962_010 0.2873318014 - - -
20 Hb_159307_010 0.2888402904 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_001418_060 Hb_001418_060 Hb_001385_090 Hb_001385_090 Hb_001418_060--Hb_001385_090 Hb_130134_020 Hb_130134_020 Hb_001418_060--Hb_130134_020 Hb_060054_010 Hb_060054_010 Hb_001418_060--Hb_060054_010 Hb_074979_030 Hb_074979_030 Hb_001418_060--Hb_074979_030 Hb_000589_230 Hb_000589_230 Hb_001418_060--Hb_000589_230 Hb_005016_070 Hb_005016_070 Hb_001418_060--Hb_005016_070 Hb_115578_010 Hb_115578_010 Hb_001385_090--Hb_115578_010 Hb_000295_090 Hb_000295_090 Hb_001385_090--Hb_000295_090 Hb_002249_110 Hb_002249_110 Hb_001385_090--Hb_002249_110 Hb_000523_100 Hb_000523_100 Hb_001385_090--Hb_000523_100 Hb_001385_090--Hb_130134_020 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_134310_020 Hb_134310_020 Hb_130134_020--Hb_134310_020 Hb_130134_020--Hb_000295_090 Hb_178041_010 Hb_178041_010 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010 Hb_060054_010--Hb_000589_230 Hb_106873_020 Hb_106873_020 Hb_060054_010--Hb_106873_020 Hb_025905_020 Hb_025905_020 Hb_060054_010--Hb_025905_020 Hb_003025_060 Hb_003025_060 Hb_060054_010--Hb_003025_060 Hb_000258_360 Hb_000258_360 Hb_060054_010--Hb_000258_360 Hb_074979_030--Hb_130134_030 Hb_074979_030--Hb_001385_090 Hb_074979_030--Hb_178041_010 Hb_070385_010 Hb_070385_010 Hb_074979_030--Hb_070385_010 Hb_058702_020 Hb_058702_020 Hb_074979_030--Hb_058702_020 Hb_000589_230--Hb_106873_020 Hb_000589_230--Hb_003025_060 Hb_081815_010 Hb_081815_010 Hb_000589_230--Hb_081815_010 Hb_115045_010 Hb_115045_010 Hb_000589_230--Hb_115045_010 Hb_005016_070--Hb_115045_010 Hb_005016_070--Hb_001385_090 Hb_001762_070 Hb_001762_070 Hb_005016_070--Hb_001762_070 Hb_003927_150 Hb_003927_150 Hb_005016_070--Hb_003927_150 Hb_059952_010 Hb_059952_010 Hb_005016_070--Hb_059952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.559011 0.278137 0.136566 0.516688 0.14213 2.7526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.129782 0

CAGE analysis