Hb_001421_010

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig1421: 15734-21677
Sequence    

Annotation

kegg
ID vvi:100250547
description two-component response regulator-like APRR2
nr
ID XP_012074247.1
description PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
swissprot
ID Q6LA43
description Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2
trembl
ID A0A067KJ37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10297 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator-like aprr2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11235: 16063-21689 , PASA_asmbl_11236: 15638-21683 , PASA_asmbl_11238: 19590-19838
cDNA
(Sanger)
(ID:Location)		 004_N07.ab1: 15638-18531 , 015_E16.ab1: 16695-16828 , 026_J22.ab1: 15769-18552

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001421_010 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
2 Hb_175758_010 0.0528134672 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
3 Hb_010519_020 0.0665113027 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
4 Hb_000403_110 0.0717614354 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
5 Hb_011472_020 0.0832871352 - - PREDICTED: mucin-17-like [Jatropha curcas]
6 Hb_001329_110 0.0910232822 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
7 Hb_008783_020 0.0910394553 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
8 Hb_001318_120 0.0943089226 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
9 Hb_005276_220 0.0956507073 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
10 Hb_001636_010 0.097726577 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
11 Hb_000840_050 0.0985576445 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
12 Hb_006711_020 0.1020763272 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
13 Hb_010417_100 0.103214857 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
14 Hb_000011_120 0.1071167571 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
15 Hb_166009_010 0.1113819903 - - carbonyl reductase, putative [Ricinus communis]
16 Hb_001894_040 0.1143385799 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
17 Hb_007123_020 0.1151985019 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
18 Hb_000236_050 0.1156435024 - - phosphate transporter [Manihot esculenta]
19 Hb_000009_130 0.1156795855 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
20 Hb_003788_010 0.1160969634 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_001421_010 Hb_001421_010 Hb_175758_010 Hb_175758_010 Hb_001421_010--Hb_175758_010 Hb_010519_020 Hb_010519_020 Hb_001421_010--Hb_010519_020 Hb_000403_110 Hb_000403_110 Hb_001421_010--Hb_000403_110 Hb_011472_020 Hb_011472_020 Hb_001421_010--Hb_011472_020 Hb_001329_110 Hb_001329_110 Hb_001421_010--Hb_001329_110 Hb_008783_020 Hb_008783_020 Hb_001421_010--Hb_008783_020 Hb_175758_010--Hb_001329_110 Hb_175758_010--Hb_010519_020 Hb_000011_120 Hb_000011_120 Hb_175758_010--Hb_000011_120 Hb_001318_120 Hb_001318_120 Hb_175758_010--Hb_001318_120 Hb_000840_050 Hb_000840_050 Hb_175758_010--Hb_000840_050 Hb_010519_020--Hb_001318_120 Hb_010519_020--Hb_011472_020 Hb_006711_020 Hb_006711_020 Hb_010519_020--Hb_006711_020 Hb_010519_020--Hb_000403_110 Hb_000403_110--Hb_008783_020 Hb_005276_220 Hb_005276_220 Hb_000403_110--Hb_005276_220 Hb_000403_110--Hb_175758_010 Hb_000403_110--Hb_001318_120 Hb_011472_020--Hb_005276_220 Hb_011472_020--Hb_001318_120 Hb_011472_020--Hb_000403_110 Hb_039022_020 Hb_039022_020 Hb_011472_020--Hb_039022_020 Hb_001329_110--Hb_000011_120 Hb_001329_110--Hb_001318_120 Hb_001329_110--Hb_000840_050 Hb_001329_110--Hb_010519_020 Hb_107809_010 Hb_107809_010 Hb_008783_020--Hb_107809_010 Hb_008783_020--Hb_005276_220 Hb_001102_270 Hb_001102_270 Hb_008783_020--Hb_001102_270 Hb_008783_020--Hb_175758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.527044 116.693 58.1564 73.1083 0.489908 0.223594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.321141 0.341884 0.0848997 178.228 45.6538

CAGE analysis