Hb_001421_020

Information

Type -
Description -
Location Contig1421: 36792-45941
Sequence    

Annotation

kegg
ID rcu:RCOM_1278000
description hypothetical protein
nr
ID KHG01123.1
description hypothetical protein F383_00667 [Gossypium arboreum]
swissprot
ID Q9C5W7
description Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana GN=TOM2A PE=1 SV=1
trembl
ID A0A0B0MG25
description Uncharacterized protein OS=Gossypium arboreum GN=F383_00667 PE=4 SV=1
Gene Ontology
ID GO:0016020
description tobamovirus multiplication protein 2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11239: 41039-41830 , PASA_asmbl_11240: 36730-44179 , PASA_asmbl_11241: 37099-43116 , PASA_asmbl_11242: 36786-44154 , PASA_asmbl_11243: 43145-43537 , PASA_asmbl_11244: 41968-42136
cDNA
(Sanger)
(ID:Location)		 006_K05.ab1: 36734-42983 , 008_I01.ab1: 36803-37611 , 011_C23.ab1: 36786-42995 , 011_O12.ab1: 36786-42993 , 024_D04.ab1: 36786-42955 , 032_I03.ab1: 36734-42995 , 037_I13.ab1: 36734-42983 , 048_K05.ab1: 36786-43043

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001421_020 0.0 - - hypothetical protein F383_00667 [Gossypium arboreum]
2 Hb_001502_070 0.0760969428 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
3 Hb_001221_410 0.105827477 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
4 Hb_001143_170 0.1084726653 - - nucellin, putative [Ricinus communis]
5 Hb_000465_040 0.1138736813 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
6 Hb_002107_130 0.1165407815 - - protein with unknown function [Ricinus communis]
7 Hb_000723_090 0.118621459 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007632_090 0.1187650586 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
9 Hb_021443_070 0.1200393627 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
10 Hb_003125_040 0.1202778371 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
11 Hb_000154_080 0.1219120982 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
12 Hb_002105_090 0.1221793688 - - Rab4 [Hevea brasiliensis]
13 Hb_001090_040 0.1222646759 - - Transmembrane protein 50A, putative [Ricinus communis]
14 Hb_010931_090 0.1255701693 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000617_020 0.1266976302 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
16 Hb_003551_020 0.1272718259 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
17 Hb_015978_060 0.127887514 - - unnamed protein product [Vitis vinifera]
18 Hb_002149_020 0.1295332064 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
19 Hb_001246_090 0.1300180704 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
20 Hb_011537_010 0.130502598 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]

Gene co-expression network

sample Hb_001421_020 Hb_001421_020 Hb_001502_070 Hb_001502_070 Hb_001421_020--Hb_001502_070 Hb_001221_410 Hb_001221_410 Hb_001421_020--Hb_001221_410 Hb_001143_170 Hb_001143_170 Hb_001421_020--Hb_001143_170 Hb_000465_040 Hb_000465_040 Hb_001421_020--Hb_000465_040 Hb_002107_130 Hb_002107_130 Hb_001421_020--Hb_002107_130 Hb_000723_090 Hb_000723_090 Hb_001421_020--Hb_000723_090 Hb_021443_070 Hb_021443_070 Hb_001502_070--Hb_021443_070 Hb_001502_070--Hb_001221_410 Hb_002149_020 Hb_002149_020 Hb_001502_070--Hb_002149_020 Hb_015978_060 Hb_015978_060 Hb_001502_070--Hb_015978_060 Hb_009838_090 Hb_009838_090 Hb_001502_070--Hb_009838_090 Hb_007254_040 Hb_007254_040 Hb_001221_410--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_001221_410--Hb_032717_080 Hb_002105_090 Hb_002105_090 Hb_001221_410--Hb_002105_090 Hb_000169_010 Hb_000169_010 Hb_001221_410--Hb_000169_010 Hb_001135_050 Hb_001135_050 Hb_001221_410--Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001221_410--Hb_001246_090 Hb_021068_050 Hb_021068_050 Hb_001143_170--Hb_021068_050 Hb_026198_050 Hb_026198_050 Hb_001143_170--Hb_026198_050 Hb_007919_050 Hb_007919_050 Hb_001143_170--Hb_007919_050 Hb_001008_060 Hb_001008_060 Hb_001143_170--Hb_001008_060 Hb_159558_030 Hb_159558_030 Hb_001143_170--Hb_159558_030 Hb_001143_170--Hb_001221_410 Hb_000457_110 Hb_000457_110 Hb_000465_040--Hb_000457_110 Hb_000465_040--Hb_000723_090 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_000928_240 Hb_000928_240 Hb_002107_130--Hb_000928_240 Hb_003878_190 Hb_003878_190 Hb_002107_130--Hb_003878_190 Hb_001184_090 Hb_001184_090 Hb_002107_130--Hb_001184_090 Hb_002006_020 Hb_002006_020 Hb_002107_130--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_002107_130--Hb_001477_110 Hb_156635_030 Hb_156635_030 Hb_002107_130--Hb_156635_030 Hb_000723_090--Hb_002105_090 Hb_000500_130 Hb_000500_130 Hb_000723_090--Hb_000500_130 Hb_000316_110 Hb_000316_110 Hb_000723_090--Hb_000316_110 Hb_000723_090--Hb_159558_030 Hb_002400_220 Hb_002400_220 Hb_000723_090--Hb_002400_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.5468 32.4479 27.3767 82.8751 200.401 119.641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.201 142.464 82.1651 50.6741 19.142

CAGE analysis