Hb_001421_060

Information

Type -
Description -
Location Contig1421: 107384-112642
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02840g
description tobamovirus multiplication protein 2B
nr
ID XP_012080851.1
description PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
swissprot
ID Q8H960
description Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana GN=TOM2B PE=2 SV=2
trembl
ID U5GN76
description Tobamovirus multiplication protein 2B OS=Populus trichocarpa GN=POPTR_0001s02840g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11254: 107369-112677
cDNA
(Sanger)
(ID:Location)		 025_B13.ab1: 107369-112677

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001421_060 0.0 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
2 Hb_003599_040 0.0664073887 - - unnamed protein product [Vitis vinifera]
3 Hb_000373_120 0.0667484878 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
4 Hb_001016_030 0.0683118909 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
5 Hb_000103_090 0.0706094202 - - PREDICTED: protein RDM1 [Jatropha curcas]
6 Hb_006816_530 0.0726099406 - - 60S ribosomal protein L18, putative [Ricinus communis]
7 Hb_015807_040 0.0730287488 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
8 Hb_001006_190 0.0759104936 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
9 Hb_005736_060 0.0761802119 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
10 Hb_159809_020 0.077328294 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000086_550 0.0780200025 - - Os02g0814700 [Oryza sativa Japonica Group]
12 Hb_001616_040 0.0784722335 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
13 Hb_008695_040 0.0784896749 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
14 Hb_033153_090 0.0785774927 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
15 Hb_000270_370 0.0820821195 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
16 Hb_006541_010 0.0827554338 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
17 Hb_001824_010 0.0828308729 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
18 Hb_000331_450 0.0833535433 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
19 Hb_002890_140 0.084449471 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
20 Hb_002596_040 0.0845882556 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001421_060 Hb_001421_060 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_002284_240 Hb_002284_240 Hb_003599_040--Hb_002284_240 Hb_159809_020 Hb_159809_020 Hb_003599_040--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100 Hb_000270_370 Hb_000270_370 Hb_000373_120--Hb_000270_370 Hb_000479_090 Hb_000479_090 Hb_000373_120--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000373_120--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000373_120--Hb_010068_020 Hb_004375_100 Hb_004375_100 Hb_000373_120--Hb_004375_100 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_003126_090 Hb_003126_090 Hb_001016_030--Hb_003126_090 Hb_002830_020 Hb_002830_020 Hb_001016_030--Hb_002830_020 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_000331_450 Hb_000331_450 Hb_015807_040--Hb_000331_450 Hb_010042_010 Hb_010042_010 Hb_015807_040--Hb_010042_010 Hb_006816_210 Hb_006816_210 Hb_015807_040--Hb_006816_210 Hb_001833_110 Hb_001833_110 Hb_015807_040--Hb_001833_110 Hb_015807_040--Hb_159809_020 Hb_001832_010 Hb_001832_010 Hb_015807_040--Hb_001832_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9937 3.7029 4.81189 8.65512 7.55229 13.973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2463 22.6867 10.284 9.61099 6.84237

CAGE analysis