Hb_001421_070

Information

Type -
Description -
Location Contig1421: 124702-133942
Sequence    

Annotation

kegg
ID tcc:TCM_015773
description Phosphoribosyltransferase family protein
nr
ID XP_012080853.1
description PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
swissprot
ID Q42581
description Ribose-phosphate pyrophosphokinase 1, chloroplastic OS=Arabidopsis thaliana GN=PRS1 PE=2 SV=2
trembl
ID A0A067K353
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16216 PE=3 SV=1
Gene Ontology
ID GO:0000287
description ribose-phosphate pyrophosphokinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11255: 124824-133177 , PASA_asmbl_11256: 126205-126631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001421_070 0.0 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
2 Hb_001366_140 0.1350526437 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
3 Hb_000699_090 0.1361277781 - - cyclophilin, putative [Ricinus communis]
4 Hb_000028_100 0.1424472546 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
5 Hb_003038_190 0.1471661346 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
6 Hb_011236_010 0.1509126923 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
7 Hb_003327_050 0.1566317934 - - surfeit locus protein, putative [Ricinus communis]
8 Hb_003633_060 0.1569033225 - - translationally controlled tumor protein [Hevea brasiliensis]
9 Hb_000045_250 0.1569106259 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
10 Hb_000175_320 0.1613786964 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
11 Hb_004453_020 0.1616789624 - - unnamed protein product [Vitis vinifera]
12 Hb_012251_010 0.1621116625 - - -
13 Hb_000203_020 0.1622586684 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
14 Hb_001513_010 0.1631048337 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000134_070 0.1671118935 - - 60S ribosomal protein L6, putative [Ricinus communis]
16 Hb_000441_110 0.1672844113 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
17 Hb_001322_150 0.1686593732 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
18 Hb_002235_080 0.1695556593 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
19 Hb_003994_250 0.1696930167 - - membrane associated ring finger 1,8, putative [Ricinus communis]
20 Hb_001269_170 0.1697461462 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001421_070 Hb_001421_070 Hb_001366_140 Hb_001366_140 Hb_001421_070--Hb_001366_140 Hb_000699_090 Hb_000699_090 Hb_001421_070--Hb_000699_090 Hb_000028_100 Hb_000028_100 Hb_001421_070--Hb_000028_100 Hb_003038_190 Hb_003038_190 Hb_001421_070--Hb_003038_190 Hb_011236_010 Hb_011236_010 Hb_001421_070--Hb_011236_010 Hb_003327_050 Hb_003327_050 Hb_001421_070--Hb_003327_050 Hb_003414_050 Hb_003414_050 Hb_001366_140--Hb_003414_050 Hb_001322_150 Hb_001322_150 Hb_001366_140--Hb_001322_150 Hb_001366_140--Hb_000699_090 Hb_000005_090 Hb_000005_090 Hb_001366_140--Hb_000005_090 Hb_004127_020 Hb_004127_020 Hb_001366_140--Hb_004127_020 Hb_000699_090--Hb_011236_010 Hb_000906_040 Hb_000906_040 Hb_000699_090--Hb_000906_040 Hb_000577_090 Hb_000577_090 Hb_000699_090--Hb_000577_090 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_004223_040 Hb_004223_040 Hb_000699_090--Hb_004223_040 Hb_000574_160 Hb_000574_160 Hb_000699_090--Hb_000574_160 Hb_003929_150 Hb_003929_150 Hb_000028_100--Hb_003929_150 Hb_000155_160 Hb_000155_160 Hb_000028_100--Hb_000155_160 Hb_002235_080 Hb_002235_080 Hb_000028_100--Hb_002235_080 Hb_003494_050 Hb_003494_050 Hb_000028_100--Hb_003494_050 Hb_000419_020 Hb_000419_020 Hb_000028_100--Hb_000419_020 Hb_000441_110 Hb_000441_110 Hb_000028_100--Hb_000441_110 Hb_003038_190--Hb_000699_090 Hb_000203_020 Hb_000203_020 Hb_003038_190--Hb_000203_020 Hb_003038_190--Hb_002235_080 Hb_000175_320 Hb_000175_320 Hb_003038_190--Hb_000175_320 Hb_000331_700 Hb_000331_700 Hb_003038_190--Hb_000331_700 Hb_000093_110 Hb_000093_110 Hb_003038_190--Hb_000093_110 Hb_011236_010--Hb_004223_040 Hb_011236_010--Hb_003929_150 Hb_006478_160 Hb_006478_160 Hb_011236_010--Hb_006478_160 Hb_001718_030 Hb_001718_030 Hb_011236_010--Hb_001718_030 Hb_000676_310 Hb_000676_310 Hb_011236_010--Hb_000676_310 Hb_086639_090 Hb_086639_090 Hb_003327_050--Hb_086639_090 Hb_003327_050--Hb_000441_110 Hb_003327_050--Hb_000028_100 Hb_001369_170 Hb_001369_170 Hb_003327_050--Hb_001369_170 Hb_031718_010 Hb_031718_010 Hb_003327_050--Hb_031718_010 Hb_004453_020 Hb_004453_020 Hb_003327_050--Hb_004453_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.76126 3.65382 1.83725 7.06222 1.13726 7.65841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75338 24.6532 6.27166 3.79223 6.5352

CAGE analysis