Hb_001424_010

Information

Type -
Description -
Location Contig1424: 12425-26029
Sequence    

Annotation

kegg
ID rcu:RCOM_1563760
description serine/threonine protein kinase, putative (EC:2.7.11.13)
nr
ID XP_002514387.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID P93025
description Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2
trembl
ID B9RKW8
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1563760 PE=4 SV=1
Gene Ontology
ID GO:0005794
description phototropin-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11274: 12371-25915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001424_010 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_000530_040 0.0311014148 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
3 Hb_078954_030 0.0338241543 - - conserved hypothetical protein [Ricinus communis]
4 Hb_179129_010 0.0416519094 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
5 Hb_000697_030 0.0478561639 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
6 Hb_016371_010 0.0487145625 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
7 Hb_000025_700 0.0541882766 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
8 Hb_001975_120 0.0545902518 - - chlorophyll a/b binding protein type II [Glycine max]
9 Hb_004346_050 0.0578131525 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
10 Hb_003573_030 0.0580294005 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
11 Hb_000281_120 0.0601587678 - - protein binding protein, putative [Ricinus communis]
12 Hb_003651_030 0.0612560563 - - lyase, putative [Ricinus communis]
13 Hb_000359_050 0.0629815135 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
14 Hb_001159_050 0.0633883385 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
15 Hb_002805_200 0.0705138081 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
16 Hb_004411_010 0.0705259447 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
17 Hb_000069_220 0.0705564004 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
18 Hb_000962_090 0.0709271945 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
19 Hb_003038_230 0.0735397865 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
20 Hb_001343_030 0.0763460607 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001424_010 Hb_001424_010 Hb_000530_040 Hb_000530_040 Hb_001424_010--Hb_000530_040 Hb_078954_030 Hb_078954_030 Hb_001424_010--Hb_078954_030 Hb_179129_010 Hb_179129_010 Hb_001424_010--Hb_179129_010 Hb_000697_030 Hb_000697_030 Hb_001424_010--Hb_000697_030 Hb_016371_010 Hb_016371_010 Hb_001424_010--Hb_016371_010 Hb_000025_700 Hb_000025_700 Hb_001424_010--Hb_000025_700 Hb_000530_040--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_000530_040--Hb_003573_030 Hb_001975_120 Hb_001975_120 Hb_000530_040--Hb_001975_120 Hb_000069_220 Hb_000069_220 Hb_000530_040--Hb_000069_220 Hb_000530_040--Hb_078954_030 Hb_078954_030--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_078954_030--Hb_004346_050 Hb_078954_030--Hb_000025_700 Hb_078954_030--Hb_016371_010 Hb_179129_010--Hb_004346_050 Hb_179129_010--Hb_016371_010 Hb_179129_010--Hb_000025_700 Hb_179129_010--Hb_000530_040 Hb_000697_030--Hb_000069_220 Hb_000697_030--Hb_003573_030 Hb_004411_010 Hb_004411_010 Hb_000697_030--Hb_004411_010 Hb_000697_030--Hb_001975_120 Hb_016371_010--Hb_004346_050 Hb_016371_010--Hb_000697_030 Hb_016371_010--Hb_004411_010 Hb_000025_700--Hb_004346_050 Hb_001369_340 Hb_001369_340 Hb_000025_700--Hb_001369_340 Hb_000025_700--Hb_016371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.53772 55.7287 16.1424 0 0.0302477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0505622 0.0397898 0 0.220787 46.2219

CAGE analysis