Hb_001424_020

Information

Type -
Description -
Location Contig1424: 27147-29447
Sequence    

Annotation

kegg
ID vvi:100257590
description AP-1 complex subunit sigma-1-like
nr
ID XP_004249859.1
description PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
swissprot
ID O23685
description AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2 PE=2 SV=1
trembl
ID A5C1I3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017884 PE=4 SV=1
Gene Ontology
ID GO:0005794
description ap-1 complex subunit sigma-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001424_020 0.0 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
2 Hb_005211_190 0.0819956296 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
3 Hb_000260_200 0.0831271835 - - -
4 Hb_000365_080 0.0843547329 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
5 Hb_002687_170 0.0893232864 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
6 Hb_000069_140 0.0926446027 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
7 Hb_000083_090 0.0934052237 - - immunophilin, putative [Ricinus communis]
8 Hb_002107_120 0.0982180522 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
9 Hb_002391_220 0.0999535643 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
10 Hb_007575_070 0.1021303089 - - Histone H3.2 [Glycine soja]
11 Hb_009421_040 0.1028190741 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
12 Hb_003053_030 0.1028243646 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
13 Hb_000389_080 0.1055949318 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
14 Hb_000364_030 0.1057032842 - - RNA binding protein, putative [Ricinus communis]
15 Hb_005474_060 0.1067831569 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
16 Hb_002609_210 0.1074108247 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
17 Hb_000062_390 0.1079010457 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
18 Hb_001634_040 0.1081641382 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
19 Hb_000905_180 0.10894721 - - 60S ribosomal protein L31A [Hevea brasiliensis]
20 Hb_004156_040 0.1090332132 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]

Gene co-expression network

sample Hb_001424_020 Hb_001424_020 Hb_005211_190 Hb_005211_190 Hb_001424_020--Hb_005211_190 Hb_000260_200 Hb_000260_200 Hb_001424_020--Hb_000260_200 Hb_000365_080 Hb_000365_080 Hb_001424_020--Hb_000365_080 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_000069_140 Hb_000069_140 Hb_001424_020--Hb_000069_140 Hb_000083_090 Hb_000083_090 Hb_001424_020--Hb_000083_090 Hb_005211_190--Hb_000365_080 Hb_002609_210 Hb_002609_210 Hb_005211_190--Hb_002609_210 Hb_002107_120 Hb_002107_120 Hb_005211_190--Hb_002107_120 Hb_009421_040 Hb_009421_040 Hb_005211_190--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_005211_190--Hb_000680_140 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000260_200--Hb_000069_140 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_007304_070 Hb_007304_070 Hb_000365_080--Hb_007304_070 Hb_007416_020 Hb_007416_020 Hb_000365_080--Hb_007416_020 Hb_007575_070 Hb_007575_070 Hb_000365_080--Hb_007575_070 Hb_000365_080--Hb_002107_120 Hb_001158_230 Hb_001158_230 Hb_002687_170--Hb_001158_230 Hb_004459_040 Hb_004459_040 Hb_002687_170--Hb_004459_040 Hb_005181_030 Hb_005181_030 Hb_002687_170--Hb_005181_030 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_002687_170--Hb_009421_040 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_000069_140--Hb_002391_220 Hb_000069_140--Hb_012539_020 Hb_000820_130 Hb_000820_130 Hb_000069_140--Hb_000820_130 Hb_000270_720 Hb_000270_720 Hb_000069_140--Hb_000270_720 Hb_000083_090--Hb_000163_210 Hb_000083_090--Hb_000260_200 Hb_000389_080 Hb_000389_080 Hb_000083_090--Hb_000389_080 Hb_000193_120 Hb_000193_120 Hb_000083_090--Hb_000193_120 Hb_004156_040 Hb_004156_040 Hb_000083_090--Hb_004156_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7197 10.0371 18.1982 16.4572 22.6614 36.0246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.504 142.203 59.3725 22.8978 28.6666

CAGE analysis