Hb_001425_010

Information

Type -
Description -
Location Contig1425: 67870-73125
Sequence    

Annotation

kegg
ID rcu:RCOM_1101840
description sugar transporter, putative
nr
ID XP_002528039.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q940M4
description Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1
trembl
ID B9SPX0
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1101840 PE=4 SV=1
Gene Ontology
ID GO:0016021
description organic cation carnitine transporter 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11280: 67850-69161 , PASA_asmbl_11281: 69185-69505 , PASA_asmbl_11282: 69687-71793 , PASA_asmbl_11283: 69688-71744 , PASA_asmbl_11285: 71835-72613 , PASA_asmbl_11286: 72173-72613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001425_010 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_018043_020 0.0739736219 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
3 Hb_008616_040 0.0881948463 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
4 Hb_159809_090 0.0933330445 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
5 Hb_000510_190 0.0943010956 - - glutathione reductase [Hevea brasiliensis]
6 Hb_003549_050 0.0971312351 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
7 Hb_003029_140 0.0977009692 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
8 Hb_004111_030 0.0981281195 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
9 Hb_002811_190 0.09846697 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
10 Hb_004629_030 0.1020959218 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_007576_180 0.1021171489 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
12 Hb_000496_130 0.1029434084 - - PREDICTED: fructokinase-1 [Jatropha curcas]
13 Hb_025194_090 0.1049575932 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
14 Hb_052946_010 0.1050621824 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
15 Hb_006816_010 0.1076756401 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001405_080 0.108914262 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
17 Hb_004041_030 0.1096678032 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
18 Hb_010984_010 0.1098360227 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_002811_200 0.1105311346 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
20 Hb_005695_080 0.1108388025 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001425_010 Hb_001425_010 Hb_018043_020 Hb_018043_020 Hb_001425_010--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001425_010--Hb_008616_040 Hb_159809_090 Hb_159809_090 Hb_001425_010--Hb_159809_090 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_003029_140 Hb_003029_140 Hb_001425_010--Hb_003029_140 Hb_018043_020--Hb_003029_140 Hb_018043_020--Hb_159809_090 Hb_001250_020 Hb_001250_020 Hb_018043_020--Hb_001250_020 Hb_018043_020--Hb_008616_040 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_008616_040--Hb_001250_020 Hb_008616_040--Hb_003029_140 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_159809_090--Hb_003029_140 Hb_159809_090--Hb_008616_040 Hb_052946_010 Hb_052946_010 Hb_159809_090--Hb_052946_010 Hb_007576_180 Hb_007576_180 Hb_159809_090--Hb_007576_180 Hb_000487_370 Hb_000487_370 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_001405_080 Hb_001405_080 Hb_003549_050--Hb_001405_080 Hb_000922_260 Hb_000922_260 Hb_003549_050--Hb_000922_260 Hb_003549_050--Hb_052946_010 Hb_004111_030 Hb_004111_030 Hb_003549_050--Hb_004111_030 Hb_006816_010 Hb_006816_010 Hb_003549_050--Hb_006816_010 Hb_003029_140--Hb_001250_020 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_003029_140--Hb_052946_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22898 5.8602 10.0885 5.99441 2.05312 2.1105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62124 1.97633 1.63491 8.22094 19.5485

CAGE analysis