Hb_001425_070

Information

Type -
Description -
Location Contig1425: 104180-104653
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001425_070 0.0 - - -
2 Hb_001425_060 0.0966958418 - - conserved hypothetical protein [Ricinus communis]
3 Hb_091433_030 0.114152497 - - -
4 Hb_004461_020 0.1456542634 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
5 Hb_001143_070 0.1465315609 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
6 Hb_000103_030 0.1480982145 - - hypothetical protein VITISV_021700 [Vitis vinifera]
7 Hb_034482_040 0.1481561925 - - aspartate kinase, partial [Francisella tularensis]
8 Hb_002989_040 0.1488918971 - - hypothetical protein 1 [Hevea brasiliensis]
9 Hb_003226_240 0.1490027691 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
10 Hb_001425_050 0.1511994439 - - -
11 Hb_023051_020 0.1551424905 - - -
12 Hb_002326_170 0.1796080777 - - Protein Z, putative [Ricinus communis]
13 Hb_001433_100 0.1800302268 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
14 Hb_003060_040 0.185111707 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
15 Hb_141194_010 0.189415269 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
16 Hb_000264_130 0.1899128534 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
17 Hb_000592_060 0.1939674289 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
18 Hb_000920_320 0.1987753844 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
19 Hb_003913_050 0.1992749793 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_002704_050 0.2008212823 - - cysteine-type peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001425_070 Hb_001425_070 Hb_001425_060 Hb_001425_060 Hb_001425_070--Hb_001425_060 Hb_091433_030 Hb_091433_030 Hb_001425_070--Hb_091433_030 Hb_004461_020 Hb_004461_020 Hb_001425_070--Hb_004461_020 Hb_001143_070 Hb_001143_070 Hb_001425_070--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_001425_070--Hb_000103_030 Hb_034482_040 Hb_034482_040 Hb_001425_070--Hb_034482_040 Hb_001425_060--Hb_091433_030 Hb_001425_050 Hb_001425_050 Hb_001425_060--Hb_001425_050 Hb_001425_060--Hb_000103_030 Hb_001425_060--Hb_004461_020 Hb_003060_040 Hb_003060_040 Hb_001425_060--Hb_003060_040 Hb_091433_030--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_091433_030--Hb_002989_040 Hb_023051_020 Hb_023051_020 Hb_091433_030--Hb_023051_020 Hb_091433_030--Hb_000103_030 Hb_004461_020--Hb_000103_030 Hb_004461_020--Hb_001143_070 Hb_004461_020--Hb_001425_050 Hb_002290_050 Hb_002290_050 Hb_004461_020--Hb_002290_050 Hb_001143_070--Hb_002989_040 Hb_001143_070--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_000103_030--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_034482_040--Hb_002989_040 Hb_003226_240 Hb_003226_240 Hb_034482_040--Hb_003226_240 Hb_001433_100 Hb_001433_100 Hb_034482_040--Hb_001433_100 Hb_034482_040--Hb_023051_020 Hb_032202_250 Hb_032202_250 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0651174 0.0482878 0.522258 0.764664 1.18163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.1389 78.3785 35.5172 1.3971 0.212801

CAGE analysis