Hb_001425_110

Information

Type -
Description -
Location Contig1425: 152943-154049
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_418400
description hypothetical protein
nr
ID KGN46517.1
description hypothetical protein Csa_6G106200 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID M1AD23
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007805 PE=4 SV=1
Gene Ontology
ID GO:0016787
description phospholipase a1-iigamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001425_110 0.0 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
2 Hb_001504_320 0.1485985472 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
3 Hb_000300_210 0.1515310952 - - gd2b, putative [Ricinus communis]
4 Hb_000387_060 0.1609803612 - - -
5 Hb_000329_660 0.1637771639 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
6 Hb_000264_130 0.1694779433 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
7 Hb_001842_120 0.1697955804 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_001101_010 0.1714712411 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
9 Hb_012022_100 0.1727916634 - - CPRD49 family protein [Populus trichocarpa]
10 Hb_001842_080 0.176392751 - - -
11 Hb_032202_250 0.1831846985 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
12 Hb_032660_020 0.1922650323 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
13 Hb_003226_240 0.1949253371 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
14 Hb_023051_020 0.1960806566 - - -
15 Hb_000792_120 0.1987737204 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
16 Hb_113635_010 0.2025474348 - - -
17 Hb_001433_100 0.2049026445 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
18 Hb_001186_070 0.2143910201 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
19 Hb_000270_730 0.2154566382 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
20 Hb_001922_080 0.2156175997 - - Tellurite resistance protein tehA, putative [Ricinus communis]

Gene co-expression network

sample Hb_001425_110 Hb_001425_110 Hb_001504_320 Hb_001504_320 Hb_001425_110--Hb_001504_320 Hb_000300_210 Hb_000300_210 Hb_001425_110--Hb_000300_210 Hb_000387_060 Hb_000387_060 Hb_001425_110--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130 Hb_001842_120 Hb_001842_120 Hb_001425_110--Hb_001842_120 Hb_001504_320--Hb_001842_120 Hb_001101_010 Hb_001101_010 Hb_001504_320--Hb_001101_010 Hb_008092_140 Hb_008092_140 Hb_001504_320--Hb_008092_140 Hb_003837_020 Hb_003837_020 Hb_001504_320--Hb_003837_020 Hb_003773_030 Hb_003773_030 Hb_001504_320--Hb_003773_030 Hb_001433_100 Hb_001433_100 Hb_000300_210--Hb_001433_100 Hb_032202_250 Hb_032202_250 Hb_000300_210--Hb_032202_250 Hb_003226_240 Hb_003226_240 Hb_000300_210--Hb_003226_240 Hb_000792_120 Hb_000792_120 Hb_000300_210--Hb_000792_120 Hb_000300_210--Hb_000329_660 Hb_003211_050 Hb_003211_050 Hb_000387_060--Hb_003211_050 Hb_032660_020 Hb_032660_020 Hb_000387_060--Hb_032660_020 Hb_000387_060--Hb_000329_660 Hb_000714_010 Hb_000714_010 Hb_000387_060--Hb_000714_010 Hb_000387_060--Hb_000792_120 Hb_000329_660--Hb_003211_050 Hb_001373_100 Hb_001373_100 Hb_000329_660--Hb_001373_100 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060 Hb_023051_020 Hb_023051_020 Hb_000264_130--Hb_023051_020 Hb_135585_010 Hb_135585_010 Hb_000264_130--Hb_135585_010 Hb_001425_070 Hb_001425_070 Hb_000264_130--Hb_001425_070 Hb_034482_040 Hb_034482_040 Hb_000264_130--Hb_034482_040 Hb_091433_030 Hb_091433_030 Hb_000264_130--Hb_091433_030 Hb_183612_080 Hb_183612_080 Hb_001842_120--Hb_183612_080 Hb_001842_080 Hb_001842_080 Hb_001842_120--Hb_001842_080 Hb_000270_730 Hb_000270_730 Hb_001842_120--Hb_000270_730 Hb_000046_200 Hb_000046_200 Hb_001842_120--Hb_000046_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88936 0.0439488 0.0665689 0.618436 0.98078 1.24045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.6525 78.5722 11.1922 0.317342 0.646232

CAGE analysis