Hb_001427_020

Information

Type -
Description -
Location Contig1427: 66936-67253
Sequence    

Annotation

kegg
ID rcu:RCOM_1048070
description hypothetical protein
nr
ID KDP33739.1
description hypothetical protein JCGZ_07310 [Jatropha curcas]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID A0A067KPM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07310 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11306: 67124-67786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_020 0.0 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
2 Hb_106411_010 0.1457860791 - - Ribosomal protein S25 family protein [Theobroma cacao]
3 Hb_076874_010 0.1521348489 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
4 Hb_011671_090 0.1567385576 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
5 Hb_004668_110 0.1618404522 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003925_070 0.1668663491 - - ATOZI1, putative [Ricinus communis]
7 Hb_000025_050 0.1673168638 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
8 Hb_003758_020 0.1687699868 - - UGTPg34 [Panax ginseng]
9 Hb_003363_120 0.1697526695 - - GTP-binding family protein [Populus trichocarpa]
10 Hb_001902_130 0.1710810358 - - 60S ribosomal protein L36-2 [Morus notabilis]
11 Hb_002411_080 0.1730777392 - - conserved hypothetical protein [Ricinus communis]
12 Hb_162040_010 0.1745383065 - - -
13 Hb_001124_020 0.1753010568 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
14 Hb_150023_010 0.176497202 - - 50S ribosomal protein L2, putative [Ricinus communis]
15 Hb_002471_300 0.177255588 - - PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Jatropha curcas]
16 Hb_007951_040 0.1823031111 - - signal peptidase family protein [Populus trichocarpa]
17 Hb_070469_010 0.1874468562 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
18 Hb_000028_060 0.1880596721 - - -
19 Hb_022181_030 0.1898974497 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
20 Hb_004466_040 0.1910409903 - - PREDICTED: protein RER1B-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001427_020 Hb_001427_020 Hb_106411_010 Hb_106411_010 Hb_001427_020--Hb_106411_010 Hb_076874_010 Hb_076874_010 Hb_001427_020--Hb_076874_010 Hb_011671_090 Hb_011671_090 Hb_001427_020--Hb_011671_090 Hb_004668_110 Hb_004668_110 Hb_001427_020--Hb_004668_110 Hb_003925_070 Hb_003925_070 Hb_001427_020--Hb_003925_070 Hb_000025_050 Hb_000025_050 Hb_001427_020--Hb_000025_050 Hb_106411_010--Hb_000025_050 Hb_106411_010--Hb_076874_010 Hb_106411_010--Hb_003925_070 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010 Hb_076874_010--Hb_000025_050 Hb_076874_010--Hb_003925_070 Hb_000608_110 Hb_000608_110 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_086022_010 Hb_086022_010 Hb_076874_010--Hb_086022_010 Hb_030131_040 Hb_030131_040 Hb_011671_090--Hb_030131_040 Hb_000526_050 Hb_000526_050 Hb_011671_090--Hb_000526_050 Hb_001341_120 Hb_001341_120 Hb_011671_090--Hb_001341_120 Hb_000009_650 Hb_000009_650 Hb_011671_090--Hb_000009_650 Hb_156825_010 Hb_156825_010 Hb_011671_090--Hb_156825_010 Hb_011671_090--Hb_000025_050 Hb_184134_010 Hb_184134_010 Hb_004668_110--Hb_184134_010 Hb_044662_060 Hb_044662_060 Hb_004668_110--Hb_044662_060 Hb_002750_050 Hb_002750_050 Hb_004668_110--Hb_002750_050 Hb_000189_510 Hb_000189_510 Hb_004668_110--Hb_000189_510 Hb_001373_110 Hb_001373_110 Hb_004668_110--Hb_001373_110 Hb_002450_040 Hb_002450_040 Hb_004668_110--Hb_002450_040 Hb_003925_070--Hb_000025_050 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01057 0.832679 5.01226 6.04956 4.15872 7.26114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92153 3.83104 0.373923 1.05373 1.62895

CAGE analysis