Hb_001427_030

Information

Type -
Description -
Location Contig1427: 67768-69319
Sequence    

Annotation

kegg
ID rcu:RCOM_1048090
description hypothetical protein
nr
ID XP_002514157.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1048090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11306: 67124-67786 , PASA_asmbl_11307: 68284-68418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010137_060 0.1932735361 - - PREDICTED: uncharacterized protein LOC105634409 [Jatropha curcas]
3 Hb_000016_130 0.1936656828 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
4 Hb_000130_260 0.1943840395 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
5 Hb_003663_060 0.2015362526 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
6 Hb_007922_020 0.2067801099 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
7 Hb_012506_060 0.2082307439 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
8 Hb_018272_020 0.2102262738 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
9 Hb_029584_070 0.2104062277 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
10 Hb_000861_020 0.2129402636 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
11 Hb_000529_200 0.2130171382 - - -
12 Hb_001049_110 0.2182485783 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_001513_010 0.2183389458 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010812_040 0.218549031 transcription factor TF Family: SNF2 PREDICTED: E3 ubiquitin-protein ligase SHPRH [Jatropha curcas]
15 Hb_000062_140 0.2216070953 transcription factor TF Family: GRAS hypothetical protein JCGZ_17897 [Jatropha curcas]
16 Hb_000270_290 0.2234498394 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
17 Hb_001546_060 0.2244752859 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
18 Hb_000613_110 0.2256182027 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
19 Hb_138781_010 0.2270422584 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
20 Hb_000608_250 0.2272878619 - - Cytidine/deoxycytidylate deaminase family protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_001427_030 Hb_001427_030 Hb_010137_060 Hb_010137_060 Hb_001427_030--Hb_010137_060 Hb_000016_130 Hb_000016_130 Hb_001427_030--Hb_000016_130 Hb_000130_260 Hb_000130_260 Hb_001427_030--Hb_000130_260 Hb_003663_060 Hb_003663_060 Hb_001427_030--Hb_003663_060 Hb_007922_020 Hb_007922_020 Hb_001427_030--Hb_007922_020 Hb_012506_060 Hb_012506_060 Hb_001427_030--Hb_012506_060 Hb_002897_090 Hb_002897_090 Hb_010137_060--Hb_002897_090 Hb_109000_020 Hb_109000_020 Hb_010137_060--Hb_109000_020 Hb_003342_020 Hb_003342_020 Hb_010137_060--Hb_003342_020 Hb_000645_280 Hb_000645_280 Hb_010137_060--Hb_000645_280 Hb_122968_010 Hb_122968_010 Hb_010137_060--Hb_122968_010 Hb_000482_190 Hb_000482_190 Hb_010137_060--Hb_000482_190 Hb_001089_060 Hb_001089_060 Hb_000016_130--Hb_001089_060 Hb_000816_100 Hb_000816_100 Hb_000016_130--Hb_000816_100 Hb_021346_030 Hb_021346_030 Hb_000016_130--Hb_021346_030 Hb_001259_020 Hb_001259_020 Hb_000016_130--Hb_001259_020 Hb_008221_180 Hb_008221_180 Hb_000016_130--Hb_008221_180 Hb_002374_240 Hb_002374_240 Hb_000016_130--Hb_002374_240 Hb_029584_070 Hb_029584_070 Hb_000130_260--Hb_029584_070 Hb_001790_080 Hb_001790_080 Hb_000130_260--Hb_001790_080 Hb_002758_010 Hb_002758_010 Hb_000130_260--Hb_002758_010 Hb_001936_090 Hb_001936_090 Hb_000130_260--Hb_001936_090 Hb_001080_090 Hb_001080_090 Hb_000130_260--Hb_001080_090 Hb_004899_260 Hb_004899_260 Hb_000130_260--Hb_004899_260 Hb_002681_070 Hb_002681_070 Hb_003663_060--Hb_002681_070 Hb_006915_070 Hb_006915_070 Hb_003663_060--Hb_006915_070 Hb_000861_020 Hb_000861_020 Hb_003663_060--Hb_000861_020 Hb_153533_010 Hb_153533_010 Hb_003663_060--Hb_153533_010 Hb_000631_080 Hb_000631_080 Hb_003663_060--Hb_000631_080 Hb_004994_380 Hb_004994_380 Hb_003663_060--Hb_004994_380 Hb_000261_060 Hb_000261_060 Hb_007922_020--Hb_000261_060 Hb_036790_080 Hb_036790_080 Hb_007922_020--Hb_036790_080 Hb_001435_030 Hb_001435_030 Hb_007922_020--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_007922_020--Hb_003994_110 Hb_007317_140 Hb_007317_140 Hb_007922_020--Hb_007317_140 Hb_032920_050 Hb_032920_050 Hb_007922_020--Hb_032920_050 Hb_069662_010 Hb_069662_010 Hb_012506_060--Hb_069662_010 Hb_000228_060 Hb_000228_060 Hb_012506_060--Hb_000228_060 Hb_000122_070 Hb_000122_070 Hb_012506_060--Hb_000122_070 Hb_004531_140 Hb_004531_140 Hb_012506_060--Hb_004531_140 Hb_018272_020 Hb_018272_020 Hb_012506_060--Hb_018272_020 Hb_001769_170 Hb_001769_170 Hb_012506_060--Hb_001769_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113802 0.124045 0.0881782 0.245023 0.381113 0.484155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0654246 0.565893 0.186511 0.145644 0.72455

CAGE analysis