Hb_001427_050

Information

Type -
Description -
Location Contig1427: 72276-76686
Sequence    

Annotation

kegg
ID rcu:RCOM_1048110
description protein arginine n-methyltransferase 1, putative (EC:2.1.1.125)
nr
ID XP_012076792.1
description PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
swissprot
ID Q0J2C6
description Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=PRMT1 PE=2 SV=1
trembl
ID A0A067KCA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07313 PE=4 SV=1
Gene Ontology
ID GO:0008469
description probable protein arginine n-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11311: 72249-76855 , PASA_asmbl_11312: 72249-76855
cDNA
(Sanger)
(ID:Location)		 042_F24.ab1: 74043-76855

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_050 0.0 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
2 Hb_002292_010 0.0886115237 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
3 Hb_003687_230 0.0890516413 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
4 Hb_007007_050 0.089628496 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
5 Hb_002639_150 0.0944234013 - - -
6 Hb_003467_010 0.0952690063 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
7 Hb_000926_180 0.0956367395 - - proline synthetase associated protein, putative [Ricinus communis]
8 Hb_002687_140 0.096058007 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
9 Hb_000926_310 0.0988046734 - - uncharacterized protein LOC100500241 [Glycine max]
10 Hb_000576_050 0.1036631803 - - Kinase superfamily protein [Theobroma cacao]
11 Hb_004450_060 0.104475633 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
12 Hb_000003_600 0.1052903008 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
13 Hb_058972_010 0.1058982471 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_000836_170 0.1073748415 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
15 Hb_007632_110 0.1088404967 - - chromatin regulatory protein sir2, putative [Ricinus communis]
16 Hb_000649_070 0.1097457342 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
17 Hb_007313_090 0.1097732552 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000676_050 0.1099902331 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
19 Hb_001329_130 0.1103695715 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000710_010 0.110878979 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]

Gene co-expression network

sample Hb_001427_050 Hb_001427_050 Hb_002292_010 Hb_002292_010 Hb_001427_050--Hb_002292_010 Hb_003687_230 Hb_003687_230 Hb_001427_050--Hb_003687_230 Hb_007007_050 Hb_007007_050 Hb_001427_050--Hb_007007_050 Hb_002639_150 Hb_002639_150 Hb_001427_050--Hb_002639_150 Hb_003467_010 Hb_003467_010 Hb_001427_050--Hb_003467_010 Hb_000926_180 Hb_000926_180 Hb_001427_050--Hb_000926_180 Hb_002292_010--Hb_007007_050 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002292_010--Hb_002639_150 Hb_002292_010--Hb_003687_230 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_011942_080 Hb_011942_080 Hb_003467_010--Hb_011942_080 Hb_003849_060 Hb_003849_060 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_007313_090 Hb_007313_090 Hb_000926_180--Hb_007313_090 Hb_001269_640 Hb_001269_640 Hb_000926_180--Hb_001269_640 Hb_027043_020 Hb_027043_020 Hb_000926_180--Hb_027043_020 Hb_004785_190 Hb_004785_190 Hb_000926_180--Hb_004785_190 Hb_000926_180--Hb_002639_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3351 8.15112 14.4825 4.32327 13.8182 10.9875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5624 13.3951 3.32941 4.61091 4.06547

CAGE analysis