Hb_001427_060

Information

Type -
Description -
Location Contig1427: 76752-76985
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016740
description probable protein arginine n-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11311: 72249-76855 , PASA_asmbl_11312: 72249-76855
cDNA
(Sanger)
(ID:Location)		 042_F24.ab1: 74043-76855

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_060 0.0 - - -
2 Hb_075964_010 0.1580933952 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_000007_460 0.1589863143 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
4 Hb_003581_010 0.1758734363 - - hypothetical protein VITISV_004687 [Vitis vinifera]
5 Hb_068014_010 0.184455113 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
6 Hb_007484_040 0.1872428247 - - -
7 Hb_013691_030 0.1907754024 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
8 Hb_116632_010 0.1934524119 - - unnamed protein product [Vitis vinifera]
9 Hb_177103_010 0.19461551 - - PREDICTED: histone H2AX [Elaeis guineensis]
10 Hb_007083_020 0.1973790285 - - hypothetical protein F775_15403 [Aegilops tauschii]
11 Hb_128998_010 0.1993200107 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
12 Hb_038237_010 0.1993790445 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
13 Hb_005085_030 0.2017100759 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
14 Hb_007188_020 0.2035566344 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
15 Hb_006663_090 0.2056424115 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
16 Hb_032927_010 0.205748863 - - -
17 Hb_005679_070 0.2098737588 - - hypothetical protein M569_07741, partial [Genlisea aurea]
18 Hb_012052_010 0.2104934221 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
19 Hb_115477_010 0.2112673844 - - Protein dom-3, putative [Ricinus communis]
20 Hb_152554_010 0.2125445237 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_001427_060 Hb_001427_060 Hb_075964_010 Hb_075964_010 Hb_001427_060--Hb_075964_010 Hb_000007_460 Hb_000007_460 Hb_001427_060--Hb_000007_460 Hb_003581_010 Hb_003581_010 Hb_001427_060--Hb_003581_010 Hb_068014_010 Hb_068014_010 Hb_001427_060--Hb_068014_010 Hb_007484_040 Hb_007484_040 Hb_001427_060--Hb_007484_040 Hb_013691_030 Hb_013691_030 Hb_001427_060--Hb_013691_030 Hb_171789_010 Hb_171789_010 Hb_075964_010--Hb_171789_010 Hb_032927_010 Hb_032927_010 Hb_075964_010--Hb_032927_010 Hb_005916_030 Hb_005916_030 Hb_075964_010--Hb_005916_030 Hb_005965_010 Hb_005965_010 Hb_075964_010--Hb_005965_010 Hb_115477_010 Hb_115477_010 Hb_075964_010--Hb_115477_010 Hb_010504_030 Hb_010504_030 Hb_000007_460--Hb_010504_030 Hb_128998_010 Hb_128998_010 Hb_000007_460--Hb_128998_010 Hb_007188_020 Hb_007188_020 Hb_000007_460--Hb_007188_020 Hb_000007_460--Hb_003581_010 Hb_000007_460--Hb_013691_030 Hb_000015_070 Hb_000015_070 Hb_000007_460--Hb_000015_070 Hb_000001_040 Hb_000001_040 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_000265_130 Hb_000265_130 Hb_003581_010--Hb_000265_130 Hb_003581_010--Hb_128998_010 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010 Hb_007484_040--Hb_116632_010 Hb_007484_040--Hb_003581_010 Hb_007484_040--Hb_168737_010 Hb_007484_040--Hb_000265_130 Hb_007484_040--Hb_013691_030 Hb_013691_030--Hb_010504_030 Hb_013691_030--Hb_003581_010 Hb_013691_030--Hb_007188_020 Hb_013691_030--Hb_128998_010 Hb_013691_030--Hb_116632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.729672 4.75741 1.21889 7.91721 3.3332 27.0166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80582 4.97704 1.50941 7.31764 1.6031

CAGE analysis