Hb_001427_100

Information

Type -
Description -
Location Contig1427: 108854-110512
Sequence    

Annotation

kegg
ID rcu:RCOM_1048130
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_002514161.1
description acc synthase, putative [Ricinus communis]
swissprot
ID Q9STR4
description 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1
trembl
ID B9RKB7
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1048130 PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_100 0.0 - - acc synthase, putative [Ricinus communis]
2 Hb_039946_060 0.0627107931 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
3 Hb_001408_080 0.0723325045 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
4 Hb_005111_020 0.0738107698 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
5 Hb_010164_030 0.0794680924 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
6 Hb_000020_210 0.0802054525 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
7 Hb_000012_350 0.0809373516 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
8 Hb_036520_030 0.081336904 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
9 Hb_005741_030 0.0878521316 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
10 Hb_001110_060 0.0894732826 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
11 Hb_043630_030 0.0895878893 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
12 Hb_000849_030 0.0920222155 - - PREDICTED: fimbrin-2 [Jatropha curcas]
13 Hb_003054_070 0.0936715551 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
14 Hb_001638_340 0.0963651938 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001405_170 0.10104101 - - aspartyl protease family protein [Populus trichocarpa]
16 Hb_002053_190 0.1015432392 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
17 Hb_122951_010 0.1018309682 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
18 Hb_009222_040 0.1018550115 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
19 Hb_000827_020 0.1035551725 - - unnamed protein product [Coffea canephora]
20 Hb_002960_030 0.1053815138 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]

Gene co-expression network

sample Hb_001427_100 Hb_001427_100 Hb_039946_060 Hb_039946_060 Hb_001427_100--Hb_039946_060 Hb_001408_080 Hb_001408_080 Hb_001427_100--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001427_100--Hb_005111_020 Hb_010164_030 Hb_010164_030 Hb_001427_100--Hb_010164_030 Hb_000020_210 Hb_000020_210 Hb_001427_100--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_001427_100--Hb_000012_350 Hb_005741_030 Hb_005741_030 Hb_039946_060--Hb_005741_030 Hb_001405_170 Hb_001405_170 Hb_039946_060--Hb_001405_170 Hb_039946_060--Hb_000020_210 Hb_039946_060--Hb_000012_350 Hb_003054_070 Hb_003054_070 Hb_039946_060--Hb_003054_070 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_000849_030 Hb_000849_030 Hb_001408_080--Hb_000849_030 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_036520_030 Hb_036520_030 Hb_001408_080--Hb_036520_030 Hb_005111_020--Hb_001110_060 Hb_005111_020--Hb_000020_210 Hb_000000_320 Hb_000000_320 Hb_005111_020--Hb_000000_320 Hb_122951_010 Hb_122951_010 Hb_005111_020--Hb_122951_010 Hb_147006_010 Hb_147006_010 Hb_010164_030--Hb_147006_010 Hb_010164_030--Hb_003054_070 Hb_010164_030--Hb_000012_350 Hb_001117_050 Hb_001117_050 Hb_010164_030--Hb_001117_050 Hb_010164_030--Hb_036520_030 Hb_009222_040 Hb_009222_040 Hb_000020_210--Hb_009222_040 Hb_000020_210--Hb_001405_170 Hb_000020_210--Hb_122951_010 Hb_001794_040 Hb_001794_040 Hb_000012_350--Hb_001794_040 Hb_011574_020 Hb_011574_020 Hb_000012_350--Hb_011574_020 Hb_020738_010 Hb_020738_010 Hb_000012_350--Hb_020738_010 Hb_000827_020 Hb_000827_020 Hb_000012_350--Hb_000827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.131546 0.195496 0.473254 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.011369 0.177411

CAGE analysis