Hb_001427_230

Information

Type -
Description -
Location Contig1427: 180046-182866
Sequence    

Annotation

kegg
ID rcu:RCOM_1048260
description hypothetical protein
nr
ID XP_002514174.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKD0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1048260 PE=4 SV=1
Gene Ontology
ID GO:0008168
description histone-lysine n-methyltransferase ehmt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11340: 179774-182908 , PASA_asmbl_11341: 179774-182916
cDNA
(Sanger)
(ID:Location)		 015_P17.ab1: 180190-182899

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001307_090 0.0879575961 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
3 Hb_000722_040 0.0895103255 - - -
4 Hb_000398_160 0.0918298544 - - GDP-mannose transporter, putative [Ricinus communis]
5 Hb_000648_020 0.0922198098 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
6 Hb_000224_120 0.1030343925 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
7 Hb_124755_010 0.1066014349 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
8 Hb_012423_050 0.106967156 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
9 Hb_001762_060 0.1083703412 - - pantothenate kinase, putative [Ricinus communis]
10 Hb_010560_040 0.1105306089 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
11 Hb_002471_080 0.1111752799 - - oxidoreductase, putative [Ricinus communis]
12 Hb_002025_300 0.1117260357 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
13 Hb_000865_070 0.1140322788 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
14 Hb_001173_040 0.1152150267 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000224_090 0.1156927852 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
16 Hb_003929_120 0.1167177765 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
17 Hb_000975_110 0.1171036581 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
18 Hb_000024_030 0.1184695214 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
19 Hb_003561_030 0.1187991034 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
20 Hb_000069_100 0.1189722855 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001427_230 Hb_001427_230 Hb_001307_090 Hb_001307_090 Hb_001427_230--Hb_001307_090 Hb_000722_040 Hb_000722_040 Hb_001427_230--Hb_000722_040 Hb_000398_160 Hb_000398_160 Hb_001427_230--Hb_000398_160 Hb_000648_020 Hb_000648_020 Hb_001427_230--Hb_000648_020 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_124755_010 Hb_124755_010 Hb_001427_230--Hb_124755_010 Hb_000122_020 Hb_000122_020 Hb_001307_090--Hb_000122_020 Hb_004336_050 Hb_004336_050 Hb_001307_090--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_001307_090--Hb_000975_110 Hb_001307_090--Hb_124755_010 Hb_000024_030 Hb_000024_030 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200 Hb_003561_030 Hb_003561_030 Hb_000722_040--Hb_003561_030 Hb_000722_040--Hb_000975_110 Hb_000224_090 Hb_000224_090 Hb_000722_040--Hb_000224_090 Hb_000722_040--Hb_000024_030 Hb_011161_050 Hb_011161_050 Hb_000722_040--Hb_011161_050 Hb_006831_030 Hb_006831_030 Hb_000398_160--Hb_006831_030 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000272_070 Hb_000272_070 Hb_000398_160--Hb_000272_070 Hb_000069_100 Hb_000069_100 Hb_000398_160--Hb_000069_100 Hb_001006_180 Hb_001006_180 Hb_000398_160--Hb_001006_180 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120 Hb_002025_300 Hb_002025_300 Hb_000648_020--Hb_002025_300 Hb_000648_020--Hb_124755_010 Hb_012490_050 Hb_012490_050 Hb_000648_020--Hb_012490_050 Hb_000648_020--Hb_000224_090 Hb_002471_080 Hb_002471_080 Hb_000648_020--Hb_002471_080 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_000224_120--Hb_004336_050 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_124755_010--Hb_000024_030 Hb_124755_010--Hb_002471_080 Hb_124755_010--Hb_004374_140 Hb_124755_010--Hb_000975_110 Hb_124755_010--Hb_000122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9099 4.03108 4.17638 25.4204 17.6952 41.6881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.6985 74.6322 84.4066 33.9307 12.014

CAGE analysis