Hb_001430_080

Information

Type -
Description -
Location Contig1430: 96609-101585
Sequence    

Annotation

kegg
ID rcu:RCOM_1517980
description hypothetical protein
nr
ID XP_012070267.1
description PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L632
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02574 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11361: 96774-101288 , PASA_asmbl_11362: 97478-97927 , PASA_asmbl_11363: 96945-101546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001430_080 0.0 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
2 Hb_000011_100 0.0497750068 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
3 Hb_001277_020 0.0545997373 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
4 Hb_004976_010 0.0548707188 - - hypothetical protein RCOM_1429110 [Ricinus communis]
5 Hb_000645_170 0.0591197873 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003835_070 0.0611688942 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
7 Hb_000879_040 0.0623203773 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
8 Hb_000189_600 0.0624626376 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
9 Hb_000099_040 0.0630160159 - - unnamed protein product [Coffea canephora]
10 Hb_128548_010 0.0630402797 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000398_080 0.063217617 - - tip120, putative [Ricinus communis]
12 Hb_000710_040 0.0637746742 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
13 Hb_140049_040 0.0652366914 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
14 Hb_000329_370 0.0659528065 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
15 Hb_012194_030 0.0660247763 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
16 Hb_000617_230 0.0663711104 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
17 Hb_029977_040 0.0674855338 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
18 Hb_000340_030 0.067829315 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
19 Hb_003927_040 0.0685633525 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
20 Hb_007044_110 0.0696371561 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001430_080 Hb_001430_080 Hb_000011_100 Hb_000011_100 Hb_001430_080--Hb_000011_100 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130 Hb_000236_470 Hb_000236_470 Hb_001277_020--Hb_000236_470 Hb_140049_040 Hb_140049_040 Hb_001277_020--Hb_140049_040 Hb_008147_040 Hb_008147_040 Hb_001277_020--Hb_008147_040 Hb_000099_040 Hb_000099_040 Hb_001277_020--Hb_000099_040 Hb_001277_020--Hb_000011_100 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_003927_040 Hb_003927_040 Hb_000645_170--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_000645_170--Hb_008568_020 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_000645_170--Hb_001636_050 Hb_154580_010 Hb_154580_010 Hb_000645_170--Hb_154580_010 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_000614_210 Hb_000614_210 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000879_040--Hb_000099_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3436 18.0104 15.3324 9.81667 12.3733 10.5209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55561 8.88876 7.45807 14.2687 11.5986

CAGE analysis