Hb_001431_080

Information

Type -
Description -
Location Contig1431: 86508-89061
Sequence    

Annotation

kegg
ID rcu:RCOM_0510080
description 40S ribosomal protein S11, putative
nr
ID XP_002532505.1
description 40S ribosomal protein S11, putative [Ricinus communis]
swissprot
ID Q9M5M1
description 40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1
trembl
ID B9T2N6
description 40S ribosomal protein S11, putative OS=Ricinus communis GN=RCOM_0510080 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11380: 86530-89050
cDNA
(Sanger)
(ID:Location)		 001_A19.ab1: 86528-88970 , 010_O08.ab1: 86551-88942 , 026_P13.ab1: 86534-88286 , 034_K11.ab1: 86537-88943 , 038_M19.ab1: 86528-88945

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001431_080 0.0 - - 40S ribosomal protein S11, putative [Ricinus communis]
2 Hb_001188_030 0.0691980796 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
3 Hb_001718_030 0.0783415146 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
4 Hb_015299_030 0.0793842436 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
5 Hb_132840_140 0.0869015624 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
6 Hb_000676_310 0.0894393735 - - BnaC09g40680D [Brassica napus]
7 Hb_000676_390 0.1029118807 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
8 Hb_001373_060 0.1029746822 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
9 Hb_098315_020 0.1048228004 - - hypothetical protein M569_15712 [Genlisea aurea]
10 Hb_006355_040 0.1058526097 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
11 Hb_011236_010 0.1064995469 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
12 Hb_002811_170 0.1077055501 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
13 Hb_004057_010 0.1086617657 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
14 Hb_002686_180 0.112764625 - - PREDICTED: early nodulin-93-like [Populus euphratica]
15 Hb_006326_040 0.1140864141 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002060_010 0.1147553876 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
17 Hb_003582_070 0.1152870304 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001511_260 0.1166869445 - - tryptophan biosynthesis protein, putative [Ricinus communis]
19 Hb_005306_070 0.1184277134 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
20 Hb_003494_050 0.1204309424 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]

Gene co-expression network

sample Hb_001431_080 Hb_001431_080 Hb_001188_030 Hb_001188_030 Hb_001431_080--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_001431_080--Hb_001718_030 Hb_015299_030 Hb_015299_030 Hb_001431_080--Hb_015299_030 Hb_132840_140 Hb_132840_140 Hb_001431_080--Hb_132840_140 Hb_000676_310 Hb_000676_310 Hb_001431_080--Hb_000676_310 Hb_000676_390 Hb_000676_390 Hb_001431_080--Hb_000676_390 Hb_001188_030--Hb_001718_030 Hb_001188_030--Hb_000676_390 Hb_006355_040 Hb_006355_040 Hb_001188_030--Hb_006355_040 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_001718_030--Hb_006355_040 Hb_002060_010 Hb_002060_010 Hb_001718_030--Hb_002060_010 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040 Hb_002811_170 Hb_002811_170 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_015299_030--Hb_001931_010 Hb_098315_020 Hb_098315_020 Hb_015299_030--Hb_098315_020 Hb_000134_320 Hb_000134_320 Hb_132840_140--Hb_000134_320 Hb_132840_140--Hb_000676_310 Hb_004223_040 Hb_004223_040 Hb_132840_140--Hb_004223_040 Hb_132840_140--Hb_001188_030 Hb_132840_140--Hb_015299_030 Hb_000676_310--Hb_001718_030 Hb_000676_310--Hb_001188_030 Hb_000676_310--Hb_006355_040 Hb_011236_010 Hb_011236_010 Hb_000676_310--Hb_011236_010 Hb_008071_020 Hb_008071_020 Hb_000676_390--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_000676_390--Hb_004889_020 Hb_026889_030 Hb_026889_030 Hb_000676_390--Hb_026889_030 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7401 12.2533 42.483 35.3632 9.43109 18.4222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6523 87.1534 29.3391 16.9376 16.9087

CAGE analysis