Hb_001433_170

Information

Type -
Description -
Location Contig1433: 170257-182699
Sequence    

Annotation

kegg
ID rcu:RCOM_1434170
description WD-repeat protein, putative
nr
ID XP_012088954.1
description PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q84JM4
description Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1
trembl
ID B9RFF4
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1434170 PE=4 SV=1
Gene Ontology
ID GO:0006355
description topless-related protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_170 0.0 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
2 Hb_000057_060 0.0626388488 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
3 Hb_127979_010 0.0648442908 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
4 Hb_000179_250 0.068960327 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
5 Hb_000176_140 0.0744528897 - - PREDICTED: bystin [Jatropha curcas]
6 Hb_026048_090 0.077392543 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011609_190 0.0789198718 - - 14-3-3 protein 2 [Hevea brasiliensis]
8 Hb_000771_140 0.0797801424 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
9 Hb_011316_030 0.0809503518 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
10 Hb_002377_050 0.0843422331 - - Agmatine deiminase, putative [Ricinus communis]
11 Hb_002681_140 0.0870812683 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
12 Hb_000599_120 0.0877952585 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
13 Hb_000371_110 0.0902107593 - - -
14 Hb_002044_090 0.090538495 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
15 Hb_000984_180 0.0914853506 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
16 Hb_002391_110 0.0959688323 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
17 Hb_003404_030 0.0968171527 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_009510_030 0.0975245757 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
19 Hb_000117_040 0.0977340547 - - 30S ribosomal protein S6A [Hevea brasiliensis]
20 Hb_012654_020 0.0979874564 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001433_170 Hb_001433_170 Hb_000057_060 Hb_000057_060 Hb_001433_170--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_001433_170--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_001433_170--Hb_000179_250 Hb_000176_140 Hb_000176_140 Hb_001433_170--Hb_000176_140 Hb_026048_090 Hb_026048_090 Hb_001433_170--Hb_026048_090 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_000057_060--Hb_127979_010 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_127979_010--Hb_000176_140 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_127979_010--Hb_026048_090 Hb_127979_010--Hb_003404_030 Hb_000179_250--Hb_000176_140 Hb_002044_090 Hb_002044_090 Hb_000179_250--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000179_250--Hb_011316_030 Hb_000179_250--Hb_011609_190 Hb_001776_080 Hb_001776_080 Hb_000179_250--Hb_001776_080 Hb_000176_140--Hb_001776_080 Hb_000176_140--Hb_002044_090 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_026048_090--Hb_009510_030 Hb_026048_090--Hb_000771_140 Hb_026048_090--Hb_000057_060 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_000117_040 Hb_000117_040 Hb_011609_190--Hb_000117_040 Hb_012654_020 Hb_012654_020 Hb_011609_190--Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_011609_190--Hb_002172_030 Hb_000491_080 Hb_000491_080 Hb_011609_190--Hb_000491_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.05144 1.34894 0.582762 0.314494 9.51968 8.67536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.59029 3.8398 5.805 1.75496 0.558358

CAGE analysis