Hb_001434_070

Information

Type -
Description -
Location Contig1434: 133546-135303
Sequence    

Annotation

kegg
ID cit:102629829
description mitochondrial import inner membrane translocase subunit TIM8-like
nr
ID XP_012090628.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
swissprot
ID Q9XGY4
description Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana GN=TIM8 PE=1 SV=1
trembl
ID D6BQN9
description Mitochondrial import inner membrane translocase subunit Tim8/small zinc finger-like protein OS=Jatropha curcas GN=JCGZ_26400 PE=2 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial import inner membrane translocase subunit tim8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11429: 133656-135202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001434_070 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
2 Hb_004209_030 0.0778022741 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
3 Hb_000260_200 0.0906438904 - - -
4 Hb_000635_080 0.1070808558 - - 60S ribosomal protein L17A [Hevea brasiliensis]
5 Hb_003376_290 0.1116714424 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
6 Hb_004545_130 0.1120112928 - - uncharacterized protein LOC100305465 [Glycine max]
7 Hb_000172_420 0.1131377627 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_001377_380 0.114760628 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
9 Hb_002248_100 0.117054528 - - hypothetical protein VITISV_027197 [Vitis vinifera]
10 Hb_002391_220 0.1208047048 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
11 Hb_000780_210 0.1227072245 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
12 Hb_000163_210 0.1240200285 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
13 Hb_008887_040 0.1278420211 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
14 Hb_006588_080 0.1306819151 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
15 Hb_000069_140 0.1325244847 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
16 Hb_011377_020 0.1329536418 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
17 Hb_004567_020 0.134476569 - - Small ubiquitin-related modifier 2 [Morus notabilis]
18 Hb_000270_720 0.1346396348 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_168711_010 0.1360245165 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
20 Hb_000617_110 0.136126411 - - translationally controlled tumor protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001434_070 Hb_001434_070 Hb_004209_030 Hb_004209_030 Hb_001434_070--Hb_004209_030 Hb_000260_200 Hb_000260_200 Hb_001434_070--Hb_000260_200 Hb_000635_080 Hb_000635_080 Hb_001434_070--Hb_000635_080 Hb_003376_290 Hb_003376_290 Hb_001434_070--Hb_003376_290 Hb_004545_130 Hb_004545_130 Hb_001434_070--Hb_004545_130 Hb_000172_420 Hb_000172_420 Hb_001434_070--Hb_000172_420 Hb_001377_380 Hb_001377_380 Hb_004209_030--Hb_001377_380 Hb_004209_030--Hb_000260_200 Hb_004209_030--Hb_004545_130 Hb_004209_030--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_004209_030--Hb_000780_210 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000069_140 Hb_000069_140 Hb_000260_200--Hb_000069_140 Hb_001424_020 Hb_001424_020 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_000635_080--Hb_001377_380 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000635_080--Hb_006588_080 Hb_000635_080--Hb_004545_130 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_003376_290--Hb_004209_030 Hb_003376_290--Hb_004545_130 Hb_001307_210 Hb_001307_210 Hb_003376_290--Hb_001307_210 Hb_003376_290--Hb_000635_080 Hb_005000_180 Hb_005000_180 Hb_003376_290--Hb_005000_180 Hb_004545_130--Hb_001377_380 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_000172_420--Hb_002248_100 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000172_420--Hb_000635_080 Hb_000270_720 Hb_000270_720 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.32142 2.21437 9.94231 6.67813 7.59914 8.41183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.5587 101.158 26.5173 18.9569 11.448

CAGE analysis