Hb_001435_020

Information

Type -
Description -
Location Contig1435: 28225-31752
Sequence    

Annotation

kegg
ID rcu:RCOM_0160810
description Replication factor C subunit, putative
nr
ID KDP26220.1
description hypothetical protein JCGZ_22466 [Jatropha curcas]
swissprot
ID Q8VXX4
description Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1
trembl
ID A0A067K1W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22466 PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001435_020 0.0 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
2 Hb_000622_240 0.126235494 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
3 Hb_003349_030 0.1363891724 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
4 Hb_001712_020 0.1471459728 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
5 Hb_001790_030 0.1564305568 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
6 Hb_005846_030 0.16004323 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
7 Hb_000390_110 0.1663818319 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
8 Hb_000300_660 0.16985562 - - unknown [Glycine max]
9 Hb_000028_110 0.1766137159 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
10 Hb_000429_100 0.1769341001 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
11 Hb_000107_570 0.1795773896 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
12 Hb_000877_080 0.1806311774 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
13 Hb_003666_040 0.1806347809 - - PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]
14 Hb_000627_260 0.1832522583 - - chloride channel clc, putative [Ricinus communis]
15 Hb_000164_140 0.1844622279 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_007632_170 0.18557311 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
17 Hb_000788_020 0.1880675766 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
18 Hb_000008_360 0.1893250073 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
19 Hb_006442_020 0.1897098011 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
20 Hb_000371_100 0.1905040556 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_001435_020 Hb_001435_020 Hb_000622_240 Hb_000622_240 Hb_001435_020--Hb_000622_240 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001712_020 Hb_001712_020 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_005846_030 Hb_005846_030 Hb_001435_020--Hb_005846_030 Hb_000390_110 Hb_000390_110 Hb_001435_020--Hb_000390_110 Hb_000107_570 Hb_000107_570 Hb_000622_240--Hb_000107_570 Hb_000028_110 Hb_000028_110 Hb_000622_240--Hb_000028_110 Hb_000622_240--Hb_005846_030 Hb_000638_160 Hb_000638_160 Hb_000622_240--Hb_000638_160 Hb_000164_140 Hb_000164_140 Hb_000622_240--Hb_000164_140 Hb_000877_080 Hb_000877_080 Hb_003349_030--Hb_000877_080 Hb_003349_030--Hb_001790_030 Hb_000056_070 Hb_000056_070 Hb_003349_030--Hb_000056_070 Hb_003050_250 Hb_003050_250 Hb_003349_030--Hb_003050_250 Hb_003349_030--Hb_001712_020 Hb_001019_150 Hb_001019_150 Hb_003349_030--Hb_001019_150 Hb_001712_020--Hb_000877_080 Hb_001712_020--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_003813_020 Hb_003813_020 Hb_001790_030--Hb_003813_020 Hb_000984_240 Hb_000984_240 Hb_001790_030--Hb_000984_240 Hb_001790_030--Hb_005846_030 Hb_001790_030--Hb_001712_020 Hb_000254_140 Hb_000254_140 Hb_001790_030--Hb_000254_140 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_005846_030--Hb_000164_140 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_000008_360 Hb_000008_360 Hb_000390_110--Hb_000008_360 Hb_002836_120 Hb_002836_120 Hb_000390_110--Hb_002836_120 Hb_000575_030 Hb_000575_030 Hb_000390_110--Hb_000575_030 Hb_000390_110--Hb_000622_240 Hb_000390_110--Hb_014834_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0521832 0.0104364 0.0563364 0.0845934 0.0315941 0.0295596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167354 0.112865 0.03562 0.0149752 0.198458

CAGE analysis