Hb_001435_030

Information

Type -
Description -
Location Contig1435: 35371-37677
Sequence    

Annotation

kegg
ID rcu:RCOM_0160820
description RNA binding protein, putative
nr
ID XP_012085971.1
description PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
swissprot
ID P03876
description Putative COX1/OXI3 intron 2 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=aI2 PE=3 SV=2
trembl
ID A0A067K380
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22465 PE=4 SV=1
Gene Ontology
ID GO:0006397
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001435_030 0.0 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
2 Hb_036790_080 0.0836959382 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
3 Hb_000261_060 0.0868404588 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
4 Hb_000027_190 0.0893221329 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
5 Hb_002055_040 0.0910465621 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
6 Hb_005253_030 0.0949004087 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003467_030 0.0952074477 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_007922_020 0.0956242129 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
9 Hb_000087_140 0.0993944766 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
10 Hb_001357_020 0.1006638411 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_001008_120 0.1028406086 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
12 Hb_010710_070 0.104681209 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
13 Hb_003952_060 0.1065184091 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
14 Hb_000388_090 0.1065765192 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
15 Hb_003994_110 0.1070434982 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
16 Hb_001671_010 0.1087993502 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
17 Hb_006274_050 0.1097774695 - - hypothetical protein VITISV_022618 [Vitis vinifera]
18 Hb_000661_030 0.111435824 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
19 Hb_000365_240 0.1124906502 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
20 Hb_000922_380 0.1130077456 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001435_030 Hb_001435_030 Hb_036790_080 Hb_036790_080 Hb_001435_030--Hb_036790_080 Hb_000261_060 Hb_000261_060 Hb_001435_030--Hb_000261_060 Hb_000027_190 Hb_000027_190 Hb_001435_030--Hb_000027_190 Hb_002055_040 Hb_002055_040 Hb_001435_030--Hb_002055_040 Hb_005253_030 Hb_005253_030 Hb_001435_030--Hb_005253_030 Hb_003467_030 Hb_003467_030 Hb_001435_030--Hb_003467_030 Hb_036790_080--Hb_005253_030 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_001369_750 Hb_001369_750 Hb_000261_060--Hb_001369_750 Hb_000261_060--Hb_005253_030 Hb_001008_120 Hb_001008_120 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_000661_030 Hb_000661_030 Hb_000027_190--Hb_000661_030 Hb_000679_020 Hb_000679_020 Hb_000027_190--Hb_000679_020 Hb_000005_190 Hb_000005_190 Hb_000027_190--Hb_000005_190 Hb_010710_070 Hb_010710_070 Hb_000027_190--Hb_010710_070 Hb_007441_130 Hb_007441_130 Hb_000027_190--Hb_007441_130 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090 Hb_005253_030--Hb_001008_120 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_002758_010 Hb_002758_010 Hb_005253_030--Hb_002758_010 Hb_007023_030 Hb_007023_030 Hb_003467_030--Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_003994_110 Hb_003994_110 Hb_003467_030--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003467_030--Hb_011386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47402 1.14753 1.40119 1.26607 1.74437 2.3766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8706 1.68436 2.65674 2.64696 5.02218

CAGE analysis