Hb_001437_010

Information

Type -
Description -
Location Contig1437: 16730-18127
Sequence    

Annotation

kegg
ID rcu:RCOM_0545190
description ATP binding protein, putative
nr
ID XP_012064770.1
description PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID A0A067LHD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05482 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11514: 16675-17938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
2 Hb_048755_020 0.0783852993 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
3 Hb_007313_070 0.1065368733 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
4 Hb_000186_200 0.1150436277 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
5 Hb_002701_210 0.1213898689 - - Protein COBRA precursor, putative [Ricinus communis]
6 Hb_000071_140 0.1228134687 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
7 Hb_004108_240 0.1281369743 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
8 Hb_000117_060 0.1285430506 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
9 Hb_124677_040 0.1350704488 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
10 Hb_006054_030 0.1370075569 - - PREDICTED: protein GPR107-like [Jatropha curcas]
11 Hb_012107_010 0.1389331762 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
12 Hb_001369_780 0.1395014533 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003411_030 0.1410344226 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
14 Hb_004994_300 0.1421021587 - - synaptotagmin, putative [Ricinus communis]
15 Hb_004970_180 0.1427708525 - - -
16 Hb_000045_260 0.1441467128 - - protein with unknown function [Ricinus communis]
17 Hb_000163_230 0.1447979648 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
18 Hb_000069_330 0.1456298435 - - protein with unknown function [Ricinus communis]
19 Hb_028207_040 0.1459090532 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
20 Hb_004032_310 0.146547177 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_001437_010 Hb_001437_010 Hb_048755_020 Hb_048755_020 Hb_001437_010--Hb_048755_020 Hb_007313_070 Hb_007313_070 Hb_001437_010--Hb_007313_070 Hb_000186_200 Hb_000186_200 Hb_001437_010--Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_001437_010--Hb_002701_210 Hb_000071_140 Hb_000071_140 Hb_001437_010--Hb_000071_140 Hb_004108_240 Hb_004108_240 Hb_001437_010--Hb_004108_240 Hb_048755_020--Hb_007313_070 Hb_048755_020--Hb_000071_140 Hb_000045_260 Hb_000045_260 Hb_048755_020--Hb_000045_260 Hb_004994_300 Hb_004994_300 Hb_048755_020--Hb_004994_300 Hb_048755_020--Hb_000186_200 Hb_007313_070--Hb_004994_300 Hb_003605_220 Hb_003605_220 Hb_007313_070--Hb_003605_220 Hb_172421_010 Hb_172421_010 Hb_007313_070--Hb_172421_010 Hb_002248_120 Hb_002248_120 Hb_007313_070--Hb_002248_120 Hb_000186_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_000186_200--Hb_000084_240 Hb_003078_030 Hb_003078_030 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000186_200--Hb_000045_260 Hb_000163_230 Hb_000163_230 Hb_000186_200--Hb_000163_230 Hb_002701_210--Hb_003078_030 Hb_002701_210--Hb_000084_240 Hb_002701_210--Hb_000163_230 Hb_002701_210--Hb_000045_260 Hb_002701_210--Hb_004108_240 Hb_001489_120 Hb_001489_120 Hb_000071_140--Hb_001489_120 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_004032_310 Hb_004032_310 Hb_000071_140--Hb_004032_310 Hb_001258_150 Hb_001258_150 Hb_000071_140--Hb_001258_150 Hb_124677_040 Hb_124677_040 Hb_004108_240--Hb_124677_040 Hb_004108_240--Hb_000045_260 Hb_003925_040 Hb_003925_040 Hb_004108_240--Hb_003925_040 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_004108_240--Hb_003147_060 Hb_004774_020 Hb_004774_020 Hb_004108_240--Hb_004774_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89845 18.7005 5.74318 6.65073 2.53906 1.89858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8296 2.58547 2.14729 0.979814 4.33608

CAGE analysis