Hb_001437_050

Information

Type -
Description -
Location Contig1437: 31624-38586
Sequence    

Annotation

kegg
ID rcu:RCOM_0545350
description Protein white, putative (EC:3.6.3.44)
nr
ID XP_012065103.1
description PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
swissprot
ID Q9FF46
description ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1
trembl
ID B9STW9
description Protein white, putative OS=Ricinus communis GN=RCOM_0545350 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter g family member 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_050 0.0 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
2 Hb_019033_010 0.1556771434 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
3 Hb_002233_110 0.1784462758 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
4 Hb_000091_100 0.2117038979 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_011242_030 0.218981298 - - -
6 Hb_004502_080 0.2281755138 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
7 Hb_000567_280 0.2409386063 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
8 Hb_068804_150 0.2466310961 - - conserved hypothetical protein [Ricinus communis]
9 Hb_074197_010 0.2468565364 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
10 Hb_001936_140 0.2499696606 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
11 Hb_010582_010 0.2504850242 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
12 Hb_000922_180 0.2526658147 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
13 Hb_054074_010 0.2598497579 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
14 Hb_107504_010 0.2608379986 - - -
15 Hb_000175_040 0.261238317 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
16 Hb_000275_130 0.2621704001 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
17 Hb_005199_010 0.2665665947 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000566_020 0.2686606039 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
19 Hb_000699_110 0.2687286969 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
20 Hb_002835_220 0.2692019765 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]

Gene co-expression network

sample Hb_001437_050 Hb_001437_050 Hb_019033_010 Hb_019033_010 Hb_001437_050--Hb_019033_010 Hb_002233_110 Hb_002233_110 Hb_001437_050--Hb_002233_110 Hb_000091_100 Hb_000091_100 Hb_001437_050--Hb_000091_100 Hb_011242_030 Hb_011242_030 Hb_001437_050--Hb_011242_030 Hb_004502_080 Hb_004502_080 Hb_001437_050--Hb_004502_080 Hb_000567_280 Hb_000567_280 Hb_001437_050--Hb_000567_280 Hb_000699_110 Hb_000699_110 Hb_019033_010--Hb_000699_110 Hb_019033_010--Hb_004502_080 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_068804_150 Hb_068804_150 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_002233_110--Hb_019033_010 Hb_002233_110--Hb_000091_100 Hb_002233_110--Hb_004502_080 Hb_000736_010 Hb_000736_010 Hb_002233_110--Hb_000736_010 Hb_002835_220 Hb_002835_220 Hb_002233_110--Hb_002835_220 Hb_080477_060 Hb_080477_060 Hb_000091_100--Hb_080477_060 Hb_002260_020 Hb_002260_020 Hb_000091_100--Hb_002260_020 Hb_030954_020 Hb_030954_020 Hb_000091_100--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_000091_100--Hb_009659_020 Hb_021056_010 Hb_021056_010 Hb_000091_100--Hb_021056_010 Hb_000091_100--Hb_000567_280 Hb_002685_180 Hb_002685_180 Hb_011242_030--Hb_002685_180 Hb_011242_030--Hb_019033_010 Hb_000453_210 Hb_000453_210 Hb_011242_030--Hb_000453_210 Hb_000275_130 Hb_000275_130 Hb_011242_030--Hb_000275_130 Hb_001495_060 Hb_001495_060 Hb_011242_030--Hb_001495_060 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010 Hb_003050_070 Hb_003050_070 Hb_000567_280--Hb_003050_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_000567_280--Hb_002835_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.181506 0.0426954 0.0747201 0.0943787 0.0331052 0.291994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1887 0.41118 0.0393896 0.00814978 0.10985

CAGE analysis