Hb_001437_060

Information

Type -
Description -
Location Contig1437: 40616-49555
Sequence    

Annotation

kegg
ID cit:102615448
description OTU domain-containing protein DDB_G0284757-like
nr
ID XP_012064764.1
description PREDICTED: uncharacterized protein LOC105628058 [Jatropha curcas]
swissprot
ID Q54P70
description OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=3 SV=2
trembl
ID A0A067L9T7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11518: 41684-49158
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_060 0.0 - - PREDICTED: uncharacterized protein LOC105628058 [Jatropha curcas]
2 Hb_024650_070 0.0932604335 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
3 Hb_000317_390 0.0963539647 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
4 Hb_004871_080 0.0983836999 - - tubulin-specific chaperone A (tubulin-folding cofactor A) (cfa), putative [Ricinus communis]
5 Hb_005054_210 0.0997579099 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
6 Hb_000028_350 0.101119881 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
7 Hb_006816_260 0.1032583721 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
8 Hb_003025_040 0.1088089891 - - PREDICTED: elongin-A [Jatropha curcas]
9 Hb_028396_010 0.1122882104 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
10 Hb_002111_040 0.112658345 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
11 Hb_000221_160 0.1137053321 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
12 Hb_143766_010 0.1140766585 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
13 Hb_000174_210 0.1141680763 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
14 Hb_010361_010 0.1178828363 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
15 Hb_002014_020 0.1181926634 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
16 Hb_007894_170 0.1184210943 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
17 Hb_076233_040 0.1190167649 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
18 Hb_003605_160 0.1192475231 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
19 Hb_019762_020 0.1199980863 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
20 Hb_152784_010 0.1200087988 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]

Gene co-expression network

sample Hb_001437_060 Hb_001437_060 Hb_024650_070 Hb_024650_070 Hb_001437_060--Hb_024650_070 Hb_000317_390 Hb_000317_390 Hb_001437_060--Hb_000317_390 Hb_004871_080 Hb_004871_080 Hb_001437_060--Hb_004871_080 Hb_005054_210 Hb_005054_210 Hb_001437_060--Hb_005054_210 Hb_000028_350 Hb_000028_350 Hb_001437_060--Hb_000028_350 Hb_006816_260 Hb_006816_260 Hb_001437_060--Hb_006816_260 Hb_000329_200 Hb_000329_200 Hb_024650_070--Hb_000329_200 Hb_000045_310 Hb_000045_310 Hb_024650_070--Hb_000045_310 Hb_010361_010 Hb_010361_010 Hb_024650_070--Hb_010361_010 Hb_005551_040 Hb_005551_040 Hb_024650_070--Hb_005551_040 Hb_000566_120 Hb_000566_120 Hb_024650_070--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_024650_070--Hb_028396_010 Hb_152784_010 Hb_152784_010 Hb_000317_390--Hb_152784_010 Hb_000331_200 Hb_000331_200 Hb_000317_390--Hb_000331_200 Hb_001318_250 Hb_001318_250 Hb_000317_390--Hb_001318_250 Hb_000317_390--Hb_000045_310 Hb_004108_070 Hb_004108_070 Hb_000317_390--Hb_004108_070 Hb_006693_020 Hb_006693_020 Hb_000317_390--Hb_006693_020 Hb_001584_190 Hb_001584_190 Hb_004871_080--Hb_001584_190 Hb_066768_010 Hb_066768_010 Hb_004871_080--Hb_066768_010 Hb_001047_240 Hb_001047_240 Hb_004871_080--Hb_001047_240 Hb_010042_010 Hb_010042_010 Hb_004871_080--Hb_010042_010 Hb_076693_030 Hb_076693_030 Hb_004871_080--Hb_076693_030 Hb_003622_040 Hb_003622_040 Hb_005054_210--Hb_003622_040 Hb_000174_210 Hb_000174_210 Hb_005054_210--Hb_000174_210 Hb_005765_050 Hb_005765_050 Hb_005054_210--Hb_005765_050 Hb_148121_040 Hb_148121_040 Hb_005054_210--Hb_148121_040 Hb_076233_040 Hb_076233_040 Hb_005054_210--Hb_076233_040 Hb_005054_210--Hb_000045_310 Hb_002111_040 Hb_002111_040 Hb_000028_350--Hb_002111_040 Hb_000808_190 Hb_000808_190 Hb_000028_350--Hb_000808_190 Hb_002284_230 Hb_002284_230 Hb_000028_350--Hb_002284_230 Hb_000363_360 Hb_000363_360 Hb_000028_350--Hb_000363_360 Hb_000563_200 Hb_000563_200 Hb_000028_350--Hb_000563_200 Hb_004672_010 Hb_004672_010 Hb_000028_350--Hb_004672_010 Hb_001623_060 Hb_001623_060 Hb_006816_260--Hb_001623_060 Hb_007894_170 Hb_007894_170 Hb_006816_260--Hb_007894_170 Hb_006816_260--Hb_028396_010 Hb_004044_040 Hb_004044_040 Hb_006816_260--Hb_004044_040 Hb_006816_260--Hb_005054_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27176 0.247657 2.95536 4.46842 2.50651 2.71605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.61531 5.04618 3.95339 3.42067 2.11398

CAGE analysis