Hb_001437_080

Information

Type transcription factor
Description TF Family: TCP
Location Contig1437: 57546-58870
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP44005.1
description hypothetical protein JCGZ_05472 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05472 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11520: 57571-58046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_080 0.0 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
2 Hb_000120_330 0.0904066583 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005116_060 0.1114416926 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
4 Hb_002234_100 0.1123748278 - - F-box family protein, putative isoform 1 [Theobroma cacao]
5 Hb_001030_020 0.1157661244 - - Poly(A) polymerase alpha, putative [Ricinus communis]
6 Hb_000856_380 0.1179157342 - - ubiquitin-conjugating enzyme [Medicago truncatula]
7 Hb_005306_190 0.1183327057 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
8 Hb_000679_090 0.1190328512 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
9 Hb_005488_140 0.1192573125 - - 30S ribosomal protein S5, putative [Ricinus communis]
10 Hb_001817_160 0.1193877028 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004228_030 0.1203064908 - - unnamed protein product [Coffea canephora]
12 Hb_002234_140 0.1212777683 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
13 Hb_000667_070 0.1218932888 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_000649_320 0.1222626776 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
15 Hb_015279_010 0.1238306658 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000696_150 0.1247768601 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
17 Hb_004032_360 0.1273567668 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
18 Hb_003125_200 0.1279706068 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
19 Hb_000976_310 0.1282311411 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
20 Hb_001766_060 0.1288766354 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001437_080 Hb_001437_080 Hb_000120_330 Hb_000120_330 Hb_001437_080--Hb_000120_330 Hb_005116_060 Hb_005116_060 Hb_001437_080--Hb_005116_060 Hb_002234_100 Hb_002234_100 Hb_001437_080--Hb_002234_100 Hb_001030_020 Hb_001030_020 Hb_001437_080--Hb_001030_020 Hb_000856_380 Hb_000856_380 Hb_001437_080--Hb_000856_380 Hb_005306_190 Hb_005306_190 Hb_001437_080--Hb_005306_190 Hb_002813_040 Hb_002813_040 Hb_000120_330--Hb_002813_040 Hb_004032_360 Hb_004032_360 Hb_000120_330--Hb_004032_360 Hb_001143_130 Hb_001143_130 Hb_000120_330--Hb_001143_130 Hb_003125_200 Hb_003125_200 Hb_000120_330--Hb_003125_200 Hb_015279_010 Hb_015279_010 Hb_000120_330--Hb_015279_010 Hb_000340_400 Hb_000340_400 Hb_005116_060--Hb_000340_400 Hb_007035_050 Hb_007035_050 Hb_005116_060--Hb_007035_050 Hb_095296_010 Hb_095296_010 Hb_005116_060--Hb_095296_010 Hb_006478_040 Hb_006478_040 Hb_005116_060--Hb_006478_040 Hb_005116_060--Hb_001030_020 Hb_003001_080 Hb_003001_080 Hb_005116_060--Hb_003001_080 Hb_002234_100--Hb_000856_380 Hb_012389_020 Hb_012389_020 Hb_002234_100--Hb_012389_020 Hb_004586_140 Hb_004586_140 Hb_002234_100--Hb_004586_140 Hb_002234_100--Hb_003125_200 Hb_003747_220 Hb_003747_220 Hb_002234_100--Hb_003747_220 Hb_010560_020 Hb_010560_020 Hb_002234_100--Hb_010560_020 Hb_001470_030 Hb_001470_030 Hb_001030_020--Hb_001470_030 Hb_010423_030 Hb_010423_030 Hb_001030_020--Hb_010423_030 Hb_027380_050 Hb_027380_050 Hb_001030_020--Hb_027380_050 Hb_001245_100 Hb_001245_100 Hb_001030_020--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_001030_020--Hb_001163_050 Hb_001157_040 Hb_001157_040 Hb_001030_020--Hb_001157_040 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_000856_380--Hb_010560_020 Hb_000357_110 Hb_000357_110 Hb_005306_190--Hb_000357_110 Hb_005306_190--Hb_095296_010 Hb_005306_190--Hb_005116_060 Hb_007943_050 Hb_007943_050 Hb_005306_190--Hb_007943_050 Hb_000178_130 Hb_000178_130 Hb_005306_190--Hb_000178_130 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2521 4.70065 2.58555 1.62678 1.42124 2.95504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92327 6.35039 2.16705 1.99014 1.32154

CAGE analysis