Hb_001437_100

Information

Type -
Description -
Location Contig1437: 68919-72715
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10710g
description POPTRDRAFT_902447; myb family transcription factor family protein
nr
ID XP_012070546.1
description PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
swissprot
ID Q9Y222
description Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens GN=DMTF1 PE=1 SV=1
trembl
ID A0A067KUF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02757 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11522: 70394-72429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_100 0.0 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
2 Hb_002043_170 0.0470555491 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
3 Hb_002883_010 0.0494413338 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
4 Hb_000317_440 0.0561099515 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
5 Hb_000300_580 0.0569121744 - - PREDICTED: importin-5-like [Jatropha curcas]
6 Hb_000335_010 0.0657749797 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000096_180 0.0720120823 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_031754_010 0.0739135683 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
9 Hb_046615_020 0.0744686494 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
10 Hb_000640_320 0.0759161553 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
11 Hb_002400_180 0.0765030726 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000076_080 0.0771526988 - - PREDICTED: protein MOS2 [Jatropha curcas]
13 Hb_000684_420 0.0784526175 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
14 Hb_000136_150 0.078603072 - - hypothetical protein VITISV_038366 [Vitis vinifera]
15 Hb_073171_080 0.0786596086 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
16 Hb_000003_790 0.0791819835 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
17 Hb_005129_050 0.0810922476 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
18 Hb_003581_120 0.082146089 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
19 Hb_001301_210 0.0823957752 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
20 Hb_004724_360 0.0834828918 - - OTU-like cysteine protease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001437_100 Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_001437_100--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_001437_100--Hb_002883_010 Hb_000317_440 Hb_000317_440 Hb_001437_100--Hb_000317_440 Hb_000300_580 Hb_000300_580 Hb_001437_100--Hb_000300_580 Hb_000335_010 Hb_000335_010 Hb_001437_100--Hb_000335_010 Hb_000096_180 Hb_000096_180 Hb_001437_100--Hb_000096_180 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_046615_020 Hb_046615_020 Hb_002043_170--Hb_046615_020 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_002043_170--Hb_000335_010 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_000631_150 Hb_000631_150 Hb_000317_440--Hb_000631_150 Hb_000136_150 Hb_000136_150 Hb_000317_440--Hb_000136_150 Hb_016657_020 Hb_016657_020 Hb_000317_440--Hb_016657_020 Hb_153547_010 Hb_153547_010 Hb_000317_440--Hb_153547_010 Hb_000300_580--Hb_002043_170 Hb_000300_580--Hb_000335_010 Hb_000300_580--Hb_002883_010 Hb_000250_070 Hb_000250_070 Hb_000300_580--Hb_000250_070 Hb_000329_490 Hb_000329_490 Hb_000300_580--Hb_000329_490 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_000335_010--Hb_002883_010 Hb_027073_060 Hb_027073_060 Hb_000096_180--Hb_027073_060 Hb_025477_060 Hb_025477_060 Hb_000096_180--Hb_025477_060 Hb_002291_070 Hb_002291_070 Hb_000096_180--Hb_002291_070 Hb_000096_180--Hb_002043_170 Hb_000002_440 Hb_000002_440 Hb_000096_180--Hb_000002_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.33135 2.54651 1.08798 1.02165 6.23015 7.43857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05895 1.67963 2.03708 2.0387 2.19712

CAGE analysis