Hb_001437_190

Information

Type -
Description -
Location Contig1437: 189133-197233
Sequence    

Annotation

kegg
ID rcu:RCOM_0472860
description ATP-binding cassette transporter, putative (EC:3.6.3.19)
nr
ID AIU41645.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZUU9
description ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2
trembl
ID A0A097P9Q7
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG3 PE=2 SV=1
Gene Ontology
ID GO:0005886
description abc transporter g family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11532: 189230-197280 , PASA_asmbl_11533: 195066-195348 , PASA_asmbl_11534: 195404-195834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_190 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_002284_250 0.0552231525 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
3 Hb_000237_050 0.079127363 - - CP2 [Hevea brasiliensis]
4 Hb_000237_040 0.0845925689 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
5 Hb_001195_470 0.0856956868 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
6 Hb_000062_020 0.0860930284 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_001821_150 0.088715695 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
8 Hb_003417_010 0.0887160295 - - PREDICTED: protein TPLATE [Jatropha curcas]
9 Hb_103684_010 0.0890130556 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
10 Hb_012114_100 0.0925810355 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
11 Hb_004019_120 0.0946348046 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
12 Hb_003544_050 0.096501609 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
13 Hb_004317_060 0.0970454494 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
14 Hb_003055_040 0.0974323951 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
15 Hb_001258_110 0.0983146666 - - transporter, putative [Ricinus communis]
16 Hb_006910_060 0.0986164053 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
17 Hb_002749_060 0.100395616 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
18 Hb_001442_060 0.1005779479 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
19 Hb_012286_040 0.1006869777 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
20 Hb_027445_020 0.101276275 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]

Gene co-expression network

sample Hb_001437_190 Hb_001437_190 Hb_002284_250 Hb_002284_250 Hb_001437_190--Hb_002284_250 Hb_000237_050 Hb_000237_050 Hb_001437_190--Hb_000237_050 Hb_000237_040 Hb_000237_040 Hb_001437_190--Hb_000237_040 Hb_001195_470 Hb_001195_470 Hb_001437_190--Hb_001195_470 Hb_000062_020 Hb_000062_020 Hb_001437_190--Hb_000062_020 Hb_001821_150 Hb_001821_150 Hb_001437_190--Hb_001821_150 Hb_001258_110 Hb_001258_110 Hb_002284_250--Hb_001258_110 Hb_002284_250--Hb_000062_020 Hb_002284_250--Hb_001821_150 Hb_003912_070 Hb_003912_070 Hb_002284_250--Hb_003912_070 Hb_004531_120 Hb_004531_120 Hb_002284_250--Hb_004531_120 Hb_103684_010 Hb_103684_010 Hb_000237_050--Hb_103684_010 Hb_004450_070 Hb_004450_070 Hb_000237_050--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_000237_050--Hb_019280_010 Hb_003097_140 Hb_003097_140 Hb_000237_050--Hb_003097_140 Hb_027445_020 Hb_027445_020 Hb_000237_050--Hb_027445_020 Hb_000976_100 Hb_000976_100 Hb_000237_040--Hb_000976_100 Hb_000237_040--Hb_027445_020 Hb_126976_010 Hb_126976_010 Hb_000237_040--Hb_126976_010 Hb_001369_360 Hb_001369_360 Hb_000237_040--Hb_001369_360 Hb_000237_040--Hb_000237_050 Hb_055062_040 Hb_055062_040 Hb_000237_040--Hb_055062_040 Hb_000723_220 Hb_000723_220 Hb_001195_470--Hb_000723_220 Hb_004019_120 Hb_004019_120 Hb_001195_470--Hb_004019_120 Hb_000680_110 Hb_000680_110 Hb_001195_470--Hb_000680_110 Hb_003417_010 Hb_003417_010 Hb_001195_470--Hb_003417_010 Hb_001195_470--Hb_001821_150 Hb_001195_470--Hb_004531_120 Hb_001442_060 Hb_001442_060 Hb_000062_020--Hb_001442_060 Hb_004109_230 Hb_004109_230 Hb_000062_020--Hb_004109_230 Hb_000062_020--Hb_004531_120 Hb_001109_060 Hb_001109_060 Hb_000062_020--Hb_001109_060 Hb_012760_100 Hb_012760_100 Hb_000062_020--Hb_012760_100 Hb_000161_210 Hb_000161_210 Hb_001821_150--Hb_000161_210 Hb_000130_180 Hb_000130_180 Hb_001821_150--Hb_000130_180 Hb_003038_040 Hb_003038_040 Hb_001821_150--Hb_003038_040 Hb_007982_030 Hb_007982_030 Hb_001821_150--Hb_007982_030 Hb_001821_150--Hb_003417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.23992 8.22567 3.54985 12.4637 5.20281 8.75858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99872 2.73534 4.44934 8.98052 8.91429

CAGE analysis