Hb_001437_220

Information

Type -
Description -
Location Contig1437: 210056-216206
Sequence    

Annotation

kegg
ID rcu:RCOM_0472880
description Transmembrane protein, putative (EC:2.7.1.108)
nr
ID XP_002523693.1
description Transmembrane protein, putative [Ricinus communis]
swissprot
ID Q8R2Y3
description Dolichol kinase OS=Mus musculus GN=Dolk PE=2 SV=1
trembl
ID B9SCH4
description Transmembrane protein, putative OS=Ricinus communis GN=RCOM_0472880 PE=4 SV=1
Gene Ontology
ID GO:0030176
description dolichol kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11538: 209993-216179 , PASA_asmbl_11539: 211543-213445
cDNA
(Sanger)
(ID:Location)		 005_P19.ab1: 209993-212336

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_220 0.0 - - Transmembrane protein, putative [Ricinus communis]
2 Hb_002214_050 0.0790143491 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
3 Hb_000120_750 0.0837748849 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
4 Hb_000045_190 0.0876748466 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
5 Hb_003050_230 0.0942703597 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010172_030 0.0943072119 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
7 Hb_000333_090 0.0979022631 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
8 Hb_000317_340 0.0990284135 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000362_210 0.1000688525 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
10 Hb_004108_230 0.1034625582 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
11 Hb_000487_310 0.1042245232 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
12 Hb_002119_120 0.1049541017 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
13 Hb_005432_030 0.1050279135 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
14 Hb_005997_010 0.1054348511 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
15 Hb_003175_040 0.1067787397 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
16 Hb_000496_060 0.1077135421 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
17 Hb_084849_020 0.1084402979 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_000212_260 0.1093486086 - - acyl-carrier-protein [Triadica sebifera]
19 Hb_001711_030 0.109756923 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
20 Hb_002027_210 0.1103866097 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001437_220 Hb_001437_220 Hb_002214_050 Hb_002214_050 Hb_001437_220--Hb_002214_050 Hb_000120_750 Hb_000120_750 Hb_001437_220--Hb_000120_750 Hb_000045_190 Hb_000045_190 Hb_001437_220--Hb_000045_190 Hb_003050_230 Hb_003050_230 Hb_001437_220--Hb_003050_230 Hb_010172_030 Hb_010172_030 Hb_001437_220--Hb_010172_030 Hb_000333_090 Hb_000333_090 Hb_001437_220--Hb_000333_090 Hb_002214_050--Hb_010172_030 Hb_004994_260 Hb_004994_260 Hb_002214_050--Hb_004994_260 Hb_002214_050--Hb_000333_090 Hb_000362_210 Hb_000362_210 Hb_002214_050--Hb_000362_210 Hb_000907_090 Hb_000907_090 Hb_002214_050--Hb_000907_090 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120 Hb_000634_050 Hb_000634_050 Hb_000045_190--Hb_000634_050 Hb_000798_030 Hb_000798_030 Hb_000045_190--Hb_000798_030 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100 Hb_084849_020 Hb_084849_020 Hb_003050_230--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_003050_230--Hb_001369_050 Hb_005686_110 Hb_005686_110 Hb_003050_230--Hb_005686_110 Hb_092100_020 Hb_092100_020 Hb_003050_230--Hb_092100_020 Hb_000061_330 Hb_000061_330 Hb_003050_230--Hb_000061_330 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_010172_030--Hb_000362_210 Hb_010172_030--Hb_000333_090 Hb_000333_090--Hb_084849_020 Hb_000333_090--Hb_001369_050 Hb_000333_090--Hb_000362_210 Hb_100777_010 Hb_100777_010 Hb_000333_090--Hb_100777_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3822 2.33841 3.17661 8.77936 9.79166 19.9738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.713 35.0273 20.3441 7.40874 7.21433

CAGE analysis