Hb_001437_230

Information

Type -
Description -
Location Contig1437: 220564-221809
Sequence    

Annotation

kegg
ID cic:CICLE_v10002842mg
description hypothetical protein
nr
ID XP_012064726.1
description PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LIC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05456 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal l18p l5e family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11540: 218439-221776 , PASA_asmbl_11542: 220521-220862
cDNA
(Sanger)
(ID:Location)		 001_J15.ab1: 218439-221776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_230 0.0 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
2 Hb_000787_140 0.0680391609 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
3 Hb_000172_030 0.07587984 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
4 Hb_003927_130 0.0876788748 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
5 Hb_000751_130 0.0913143257 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
6 Hb_000085_320 0.09355885 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
7 Hb_001258_080 0.0952622054 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
8 Hb_000230_540 0.0968620876 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
9 Hb_171900_050 0.0986195423 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001718_100 0.0999659507 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
11 Hb_001383_060 0.100001722 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_002539_090 0.1001315512 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
13 Hb_002716_070 0.101259706 - - PREDICTED: protein ABIL2 [Jatropha curcas]
14 Hb_004032_100 0.1024232448 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
15 Hb_025193_050 0.103499955 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
16 Hb_000087_020 0.1035171872 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
17 Hb_000024_080 0.1049522732 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
18 Hb_000317_340 0.1049953617 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000676_290 0.1053057674 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
20 Hb_000046_110 0.1067645205 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001437_230 Hb_001437_230 Hb_000787_140 Hb_000787_140 Hb_001437_230--Hb_000787_140 Hb_000172_030 Hb_000172_030 Hb_001437_230--Hb_000172_030 Hb_003927_130 Hb_003927_130 Hb_001437_230--Hb_003927_130 Hb_000751_130 Hb_000751_130 Hb_001437_230--Hb_000751_130 Hb_000085_320 Hb_000085_320 Hb_001437_230--Hb_000085_320 Hb_001258_080 Hb_001258_080 Hb_001437_230--Hb_001258_080 Hb_000787_140--Hb_000172_030 Hb_004032_100 Hb_004032_100 Hb_000787_140--Hb_004032_100 Hb_000087_020 Hb_000087_020 Hb_000787_140--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_000787_140--Hb_000024_080 Hb_000787_140--Hb_000751_130 Hb_000172_030--Hb_000751_130 Hb_000172_030--Hb_000087_020 Hb_180301_010 Hb_180301_010 Hb_000172_030--Hb_180301_010 Hb_008544_010 Hb_008544_010 Hb_000172_030--Hb_008544_010 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_000086_070 Hb_000086_070 Hb_003927_130--Hb_000086_070 Hb_001829_060 Hb_001829_060 Hb_003927_130--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_003927_130--Hb_001109_020 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_000883_050 Hb_000883_050 Hb_003927_130--Hb_000883_050 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000751_130--Hb_000087_020 Hb_000751_130--Hb_004032_100 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_002874_190 Hb_002874_190 Hb_000085_320--Hb_002874_190 Hb_000007_100 Hb_000007_100 Hb_000085_320--Hb_000007_100 Hb_000085_320--Hb_004032_100 Hb_001008_060 Hb_001008_060 Hb_000085_320--Hb_001008_060 Hb_000085_320--Hb_001383_060 Hb_000380_190 Hb_000380_190 Hb_000085_320--Hb_000380_190 Hb_002539_090 Hb_002539_090 Hb_001258_080--Hb_002539_090 Hb_001258_080--Hb_000046_110 Hb_001811_020 Hb_001811_020 Hb_001258_080--Hb_001811_020 Hb_001718_100 Hb_001718_100 Hb_001258_080--Hb_001718_100 Hb_001173_040 Hb_001173_040 Hb_001258_080--Hb_001173_040 Hb_001258_080--Hb_001829_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.96611 2.4928 3.28437 9.52938 17.7176 25.227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0746 32.1923 20.49 4.92476 4.38098

CAGE analysis