Hb_001437_300

Information

Type -
Description -
Location Contig1437: 304841-306969
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11545: 305306-306983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_300 0.0 - - -
2 Hb_004374_010 0.0887822026 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
3 Hb_017098_030 0.0905295614 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
4 Hb_000183_070 0.0926288135 - - -
5 Hb_006501_150 0.1005926389 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007992_030 0.1017374403 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
7 Hb_001514_020 0.1020955159 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
8 Hb_004813_010 0.1032898953 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_004502_030 0.1042234165 - - unknown [Populus trichocarpa]
10 Hb_006261_040 0.1051965875 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
11 Hb_000015_010 0.106441039 - - -
12 Hb_000284_200 0.1067390187 - - -
13 Hb_143766_090 0.1091341904 - - 60S ribosomal protein L31B [Hevea brasiliensis]
14 Hb_003055_050 0.1092275414 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
15 Hb_004096_170 0.1114613342 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
16 Hb_005389_140 0.1123133786 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
17 Hb_005714_040 0.1133733895 - - conserved hypothetical protein [Ricinus communis]
18 Hb_150069_020 0.1140797624 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
19 Hb_012675_090 0.1142398015 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
20 Hb_006452_190 0.114322015 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001437_300 Hb_001437_300 Hb_004374_010 Hb_004374_010 Hb_001437_300--Hb_004374_010 Hb_017098_030 Hb_017098_030 Hb_001437_300--Hb_017098_030 Hb_000183_070 Hb_000183_070 Hb_001437_300--Hb_000183_070 Hb_006501_150 Hb_006501_150 Hb_001437_300--Hb_006501_150 Hb_007992_030 Hb_007992_030 Hb_001437_300--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_001437_300--Hb_001514_020 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040 Hb_003055_050 Hb_003055_050 Hb_017098_030--Hb_003055_050 Hb_006261_040 Hb_006261_040 Hb_017098_030--Hb_006261_040 Hb_002851_060 Hb_002851_060 Hb_017098_030--Hb_002851_060 Hb_004502_030 Hb_004502_030 Hb_017098_030--Hb_004502_030 Hb_005714_040 Hb_005714_040 Hb_000183_070--Hb_005714_040 Hb_005015_010 Hb_005015_010 Hb_000183_070--Hb_005015_010 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_006501_150--Hb_001514_020 Hb_005333_040 Hb_005333_040 Hb_006501_150--Hb_005333_040 Hb_006501_150--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006501_150--Hb_033080_010 Hb_007992_030--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_007992_030--Hb_000847_070 Hb_000345_560 Hb_000345_560 Hb_007992_030--Hb_000345_560 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_001514_020--Hb_000847_070 Hb_001514_020--Hb_143766_090 Hb_001514_020--Hb_004502_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.92 16.9394 13.7718 4.94259 111.633 84.9166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.8997 78.8247 30.8487 15.8483 22.89

CAGE analysis