Hb_001439_030

Information

Type -
Description -
Location Contig1439: 25182-25854
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_030 0.0 - - -
2 Hb_000493_020 0.2401182683 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_001385_090 0.2675067791 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
4 Hb_130775_010 0.2751205938 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002540_040 0.2766660782 - - BnaC05g39550D [Brassica napus]
6 Hb_005839_010 0.2778049701 - - 30S ribosomal protein s13 [Camellia sinensis]
7 Hb_111834_010 0.2828254892 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
8 Hb_001385_080 0.2838266551 - - -
9 Hb_001762_070 0.2845624242 - - -
10 Hb_000004_140 0.2856158821 - - -
11 Hb_007761_010 0.2893365322 - - -
12 Hb_128173_010 0.2895926264 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
13 Hb_000252_230 0.2903047398 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
14 Hb_006692_050 0.292715261 - - Chloroplastic lipocalin [Theobroma cacao]
15 Hb_010997_050 0.2931497633 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
16 Hb_111332_010 0.2932390553 - - Dihydroneopterin aldolase [Morus notabilis]
17 Hb_098842_010 0.2933844985 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
18 Hb_096490_010 0.2949877335 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
19 Hb_000962_010 0.2954387948 - - -
20 Hb_105480_010 0.2959637679 - - -

Gene co-expression network

sample Hb_001439_030 Hb_001439_030 Hb_000493_020 Hb_000493_020 Hb_001439_030--Hb_000493_020 Hb_001385_090 Hb_001385_090 Hb_001439_030--Hb_001385_090 Hb_130775_010 Hb_130775_010 Hb_001439_030--Hb_130775_010 Hb_002540_040 Hb_002540_040 Hb_001439_030--Hb_002540_040 Hb_005839_010 Hb_005839_010 Hb_001439_030--Hb_005839_010 Hb_111834_010 Hb_111834_010 Hb_001439_030--Hb_111834_010 Hb_000493_020--Hb_002540_040 Hb_000219_070 Hb_000219_070 Hb_000493_020--Hb_000219_070 Hb_131621_010 Hb_131621_010 Hb_000493_020--Hb_131621_010 Hb_007765_090 Hb_007765_090 Hb_000493_020--Hb_007765_090 Hb_043999_010 Hb_043999_010 Hb_000493_020--Hb_043999_010 Hb_115578_010 Hb_115578_010 Hb_001385_090--Hb_115578_010 Hb_001418_060 Hb_001418_060 Hb_001385_090--Hb_001418_060 Hb_000295_090 Hb_000295_090 Hb_001385_090--Hb_000295_090 Hb_002249_110 Hb_002249_110 Hb_001385_090--Hb_002249_110 Hb_000523_100 Hb_000523_100 Hb_001385_090--Hb_000523_100 Hb_130134_020 Hb_130134_020 Hb_001385_090--Hb_130134_020 Hb_003636_050 Hb_003636_050 Hb_130775_010--Hb_003636_050 Hb_013727_010 Hb_013727_010 Hb_130775_010--Hb_013727_010 Hb_009268_110 Hb_009268_110 Hb_130775_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_130775_010--Hb_089491_010 Hb_076583_010 Hb_076583_010 Hb_130775_010--Hb_076583_010 Hb_136856_010 Hb_136856_010 Hb_130775_010--Hb_136856_010 Hb_000252_230 Hb_000252_230 Hb_002540_040--Hb_000252_230 Hb_000809_150 Hb_000809_150 Hb_002540_040--Hb_000809_150 Hb_001105_060 Hb_001105_060 Hb_002540_040--Hb_001105_060 Hb_002540_040--Hb_043999_010 Hb_002540_040--Hb_007765_090 Hb_002540_040--Hb_131621_010 Hb_002204_040 Hb_002204_040 Hb_005839_010--Hb_002204_040 Hb_000589_320 Hb_000589_320 Hb_005839_010--Hb_000589_320 Hb_001385_080 Hb_001385_080 Hb_005839_010--Hb_001385_080 Hb_000805_300 Hb_000805_300 Hb_005839_010--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_005839_010--Hb_001454_110 Hb_122567_020 Hb_122567_020 Hb_005839_010--Hb_122567_020 Hb_004282_030 Hb_004282_030 Hb_111834_010--Hb_004282_030 Hb_000004_140 Hb_000004_140 Hb_111834_010--Hb_000004_140 Hb_111834_010--Hb_076583_010 Hb_074701_010 Hb_074701_010 Hb_111834_010--Hb_074701_010 Hb_064951_010 Hb_064951_010 Hb_111834_010--Hb_064951_010 Hb_011794_020 Hb_011794_020 Hb_111834_010--Hb_011794_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.15343 0.249003 20.1526 3.88012 19.2786 171.76
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.962602 1.14071 0 0 3.8709

CAGE analysis